Gene detail

Gene detail information of Glyur002147s00034574

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G12110.1	0	actin-11
NR	XP_004492148.1	0	PREDICTED: actin-11-like [Cicer arietinum]
COG	YP_003266114.1	2.00E-93	actin/actin family protein [Haliangium ochraceum DSM 14365]
Swissprot	tr\|P53496\|ACT11_ARATH	0	Actin-11
trEMBL	tr\|V7B080\|V7B080_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW11209.1}

Sequence

Transcript Sequence

>Glyur002147s00034574.1
CTTATATTGAATTCCAATTTTCCCTTTTCATTTGGTCCCTTCGGTGTCTCTCCTTCTCTCTTGCTCTCTCAAATTTTCTCTGTTCCTCTCACCTTTGCCTCTGTGCATTCTCTCTTTCTCTGCCTTCCATCACCCTCGGCATTTCCCTTCCCAAAGATATTAGAAGATGGCAGACGCTGAGGATATTCAACCTCTTGTTTGTGACAACGGAACAGGAATGGTTAAGGCTGGATTTGCTGGAGACGATGCCCCACGTGCTGTGTTTCCCAGCATTGTTGGTCGTCCTCGTCACACTGGCGTGATGGTTGGCATGGGCCAAAAAGATGCATATGTTGGTGATGAGGCACAGTCTAAGCGTGGTATTTTGACTCTCAAATATCCCATTGAACATGGAATTGTGAGCAATTGGGANGACATGGAAAAGATTTGGCATCACACCTTCTATAATGAGCTTCGTGTTGCCCCAGAGGAACATCCAGTTCTTCTAACTGAGGCTCCTCTCAACCCAAAGGCTAACCGTGAGAAGATGACCCAAATCATGTTTGAGACTTTCAATACCCCAGCTATGTATGTAGCCATTCAGGCTGTTCTTTCACTATACGCCAGTGGTCGTACGACTGGTATTGTGTTGGATTCTGGTGATGGTGTCAGCCACACTGTCCCTATCTACGAGGGTTATGCCCTCCCACATGCCATCCTTCGTCTTGATCTGGCTGGGCGTGACCTCACTGATTTCTTGATGAAAATTTTGACTGAACGTGGGTATTCTTTTACCACCTCAGCAGAGCGTGAAATTGTGAGNGATGTGAAAGAAAAGCTGGCATACATTGCCCTTGACTACGAGCAAGAGCTGGAGACAGCCAGGACCAGCTCTTCTGTGGAGAAGAGCTACGAGTTGCCTGATGGTCAGGTAATCACTATTGGCGATGAGCGTTTCAGATGTCCCGAGGTCCTGTTCCAACCATCCATGATAGGAATGGAAGCATCAGGCATTCATGAGACAACATACAACTCCATCATGAAGTGCGATGTCGATATTAGGAAAGACCTCTATGGTAACATTGTCCTTTCAGGAGGAACAACCATGTTCCCAGGCATTGCTGACAGAATGAGCAAGGAAATCTCTGCATTAGCCCCCAGTAGCATGAAGATCAAGGTGGTAGCACCACCTGAGAGAAAGTACAGTGTCTGGATTGGTGGTTCTATCTTGGCATCGCTCAGCACCTTCCAGCAGATGTGGATTGCAAAGGCAGAATATGACGAGTCTGGGCCATCAATTGTGCATAGAAAGTGCTTCTAAACTTGTTTGAGAAAGAGGGTTTATTGAAGGGAAAGACTACTGTTATGATTCCTATGGAAGCACTGCAACTTGTAGTAACCCTTTCATTCTTGCTTTTGTTATCCGTTCATGTTATTATTCTCATGTTGGAGTGATGATTTACTGTAAGGAGAGTTGTTTTTCGAAATGGTCCAGTTCTTTTCANTAACATTTTGATGAGTTTTTTTTTCTCATATTTTTTGACTGGTTCATTCTGCGTATGAATTAACTGGGATTATTAAACTACGCNTGTGCCCGTGGTGATATATGCCAAATTATTATCCTTGATCATTTAAATTACAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02147	26392	30127	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002147s00034574.1	PF00022.14	Actin	5	377	1.90E-156

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	139.914
SRR1783600	control	140.435
SRR1783602	moderate drought stress	100.855
SRR1811619	moderate drought stress	99.868

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	115.743
DRR006520	Root Summer glycyrrhizin high producing strain	114.308
DRR006521	Root Winter glycyrrhizin high producing strain	32.183
DRR006522	Root Winter glycyrrhizin high producing strain	31.461
DRR006523	Root Summer glycyrrhizin low producing strain	77.591
DRR006524	Root Summer glycyrrhizin low producing strain	77.702
DRR006525	Leaf Summer glycyrrhizin high producing strain	32.871
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.515

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	210.186
SRR2868004	Drought Stress (root)	106.969
SRR2967015	Control (root)	111.579

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	48.807
SRR9715740	Leaf	31.612
SRR9715741	Leaf	36.032
SRR9715739	Root	166.561
SRR9715742	Root	91.572
SRR9715743	Root	105.086

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	98.630
SRR8749028	MeJA induced 9h	68.056
SRR8749029	MeJA induced 9h	80.719
SRR8749030	Uninduced	48.948
SRR8749031	Uninduced	35.666
SRR8749032	Uninduced	49.659

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	128.122
SRR8400027	Control - Root	139.213