Gene detail

Gene detail information of Glyur002147s00034571

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G12580.1	0	heat shock protein 70
NR	XP_006574819.1	0	PREDICTED: probable mediator of RNA polymerase II transcription subunit 37c-like isoform X1 [Glycine max]
COG	YP_004113662.1	2.00E-146	chaperone protein DnaK [Desulfurispirillum indicum S5]
Swissprot	tr\|P09189\|HSP7C_PETHY	0	Heat shock cognate 70 kDa protein
trEMBL	tr\|K7K754\|K7K754_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G09400.4}

Sequence

Transcript Sequence

>Glyur002147s00034571.1
ATGGCGAAAAGATACAAAGGACATGCAGTGGGAATCGACCTCGGCACGACGTACTCGTGTGTTGCAGTGTGGCAAGAGCAACACTGTAGAGTGGAGATTATTCACAACGACCTAGGCAACAAAACCACGCCATCTTTTGTTGCTTTCACCAACGATCAAAGGTTAGTTGGTGATGCTGCTAAGAATCAGGCCGCCACCAACCCTGAAAACACGAGATTAATTGGTAGGAAATTTAGTGATCCCATTGTTCAAAAGGATATAATGTTGTGGCCATTCAAGGTCATAGTTGGTGTTAATGACAAACCCATGATTGCTGTTCAGTACAAAGGTCAGGAGAAGCATCTATGCCCTGAGGAAATCTCGTCCATGGTCCTCACAAAGATGCGGGAGATTGCAGAGGCATACTTGGAATCACCTGTCAAAAATGCAGTTGTTACAGTGCCTGCTTACTTTAGTGATTCACAGCGCAAGGCCACCAGAGATGCGGGTGCCATTGCTGGCCTTAATGTTATGCGCATAATCAATGAACCCACTGCTGCGGCTATTGCATACGGTCTTGACAAGAGAAGCGATTGTGTTGGGGAACGAAATATCTTTGTGTTTGACCTTGGTGGTGGCACTTTTGATGTGTCTCTCCTTACTATTAAGGGTAAGGTCTTCCAAGTTAGGGCCACTGCTGGAAATACTCACCTCGGGGGAGAGGACTTTGATAACAGAATGGTGAACCACTTTGCAGAGGAGTTCAAGAGGAAGAACAAAGTGGATATTACTGGAAACTCAAGAGCCTTGAGGAGGTTGAGAACTGCATGCGAGAGGGCAAAAAGGACACTATCTTTTGCTGTTGTCACTATCGTTGAGGTAGATTCTTTATTTCAGGGCATTGATCTCACTTCATCAATCACCCGTGCCAAGTTTGAGGAGATCAATATAGACCTTTTTAATGAGTGCATGGAGACTGTGGAGAGGTGTCTTACTGATGCTAAGATGGAGAAGAGTAGTGTGCATGATGTTGTCCTTGTCGGGGGCTCTTCTAGGATTCCCAAGGCTGCTTTGTTGTGTGAAGGTGTTAAGAATGTCCCAAACTTGGTGCTATTAGATGTTACACCACTGTCCCTTGGCATATCAATAAAAGGAGATATCATGAGTGTGGTGATTCCTAGGAACACTACTATTCCTGTTAAGAAGACACAAATATATAATACATGTGAAGATAATCAAGAAAGTGTCTTTGTTGAGGTTTATGAGGGTGAGAGAACAAGAGCCAGTGATAACAATTTGCTTGGTTTTTTTAATCTTTCTGGCTTTCCCCCTGCTCCTCGTGGCCATCCTTTGGATGTATGCTTTACTATTGATGAAAATGGTATCCTAAGCGTTTCTGCTAGGGAAAATTCAACTGGCAATATGAATGAGATTACAATAACCAATGACAAAGAAAGGTTGTCAACTATAGAAATTGAAAAATTGATTCGAGAAGCTGAGGATTACCGTTTGAGGAATGCTTTAAAAGAGAAAGATATTAATTTGAGGCTCTCCTCGCTTGAAACAGAGAAGATCAACTCTGCAATTACGATGGCCACAACTTTGCTTGATGATAATGACCAGCAGAATGAAAAAGATGTTTTTGAGGATCACCTGAAGGAGCTTGAGAAAAGAGAGTTCTGCTGCGCATCTCTGATCATGCCAAGACATACTCAAGGAACTAGCTCAAATAACTCATCTGTGCATCCGCCTATGGATCCAGCTCAGAATCCTTCAAGTCCCTACTACATTCATCCAGGAGAAAACCCAGCAGCATTTGGGGTTGCAATAAAAGGAATCAGAACTGACAATGGGGTGGAATTTAATATGAGTACCTTCTATGCATCTAAAGGCATTCTCCATCAAACCTCATGTGTGGAAACTCCACAACAAAATGGCCGGGTTGAAAGAAAACATCAGCATATTCTTGCAGTGGCACGTGCACTTCTTATACAGTCCAGATTGCCTTTTAAATTCTGGGCTCATGCTGTTCTGCATGCTGTCTTTTTAATCAATCGAGTACCTTCTTCAGTTGTTAATGGTAAAATCCCTTATGAACTATTATATGGTCACTTGCCTGATTTAAGTGATTTAAAGAGTGGTACAAAAGGCTATGTTGTATATGACTTAAATAGCAGGGAGGTTTTTATTTCCAGAAATGTGGAATTCCATGAACAAGTTTTTCCATATACTGGTTCAGAATCTAGATTCCTGGATTGGCAATGCATAGAGGTTCCTACATCACCTTCCATACTTCAACCAACTCATAACCACACCTTATCACCTATTCCTACAAATCCTGACCCCTGTAGTTCATCTTTGCCCATCTCAGAATCAGAACCCTTGCCTAACTCTCATCCTGAACCCAATCCTGATTCCTCACCCATTTTATCCTCTCCTCACTCCTATACACTTTCCCTAGCCACTGAACAGGAACCCTCTTCATTCCAGGAAGCTTGTAAACATGATTGTTGGGTTCAAGCCATGAAATCTGAGTTGCAGGTTTTGGAGGCAAACAAGACATGGATTCTTGTAGACTTACCACATGGAGTGACACCTATTGGAAGCAAATGGGTCTATAAGATCAAGAGAAAGGCAGATAGGTCAATTGAAAGATGGCATATTCACCAATTAGATGTGAATAATGCTTTTCTTCATGGGGAATTACATGAGGATGTCTATATGGAGGTTCCTAAGGGTGTACATGGAGTGTCTTCATCCAAGGTTTGTAAACTCCTTAAGTCTTTATATGGGCTGAAACAAGCTAGTAGGAGTTTGATGGAGATCAAGGAGGACTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02147	1045	5630	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015074 DNA integration

molecular_function
GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002147s00034571.1	PF00012.15	HSP70	9	348	6.00E-148
Glyur002147s00034571.1	PF00012.15	HSP70	354	550	2.90E-45
Glyur002147s00034571.1	PF00665.21	rve	599	649	2.40E-10
Glyur002147s00034571.1	PF07727.9	RVT_2	877	931	1.20E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.218
SRR1783600	control	6.286
SRR1783602	moderate drought stress	5.463
SRR1811619	moderate drought stress	5.455

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.723
DRR006520	Root Summer glycyrrhizin high producing strain	13.357
DRR006521	Root Winter glycyrrhizin high producing strain	0.319
DRR006522	Root Winter glycyrrhizin high producing strain	0.317
DRR006523	Root Summer glycyrrhizin low producing strain	11.693
DRR006524	Root Summer glycyrrhizin low producing strain	11.786
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.305
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.537

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.057
SRR2868004	Drought Stress (root)	4.557
SRR2967015	Control (root)	2.776

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.133
SRR9715740	Leaf	1.069
SRR9715741	Leaf	1.953
SRR9715739	Root	0.788
SRR9715742	Root	10.548
SRR9715743	Root	9.421

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.305
SRR8749028	MeJA induced 9h	0.137
SRR8749029	MeJA induced 9h	0.521
SRR8749030	Uninduced	0.253
SRR8749031	Uninduced	0.189
SRR8749032	Uninduced	0.027

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.106
SRR8400027	Control - Root	4.274