Gene detail

Gene detail information of Glyur002146s00039025.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G37730.1	3.00E-136	Protein of unknown function (DUF604)
NR	XP_004492173.1	0	PREDICTED: uncharacterized protein LOC101494656 [Cicer arietinum]
trEMBL	tr\|A0A072U016\|A0A072U016_MEDTR	0	Transferring glycosyl group transferase {ECO:0000313\|EMBL:KEH22967.1}

Sequence

Transcript Sequence

>Glyur002146s00039025.1
ATGTGTGTTTTTGGTGTGTATATATACCCTTTCATTTCATTACCTCAAAACTTTAATCAAATTCCATCTCATCATCATTTCAAATGTCTTCTCCTTCTGTGGAATATTCACTTCGAGACCTTCTCAACAAGCCATGGGAAAACTCTTCTCTTCCCCACCATCAATACCCACCGATCTTCTCTCTTTCTTCCTCAAACTGGGTCTCGCCATTTCCACCCTCTTCCTCATCTCCCACTTCTTCTACCTCTCTCTTTCCTACCACCAACAACCCCAAAAACAACACTACTACGACCAAACATCCTTAAAACAAATGTTCCAACGCCGCACCCCCACCGTCACCCACCGGCTACGGCGGCGGCGATGAAGAGCCCACACCCACCAACATCTCCCCACATCCATTTTCGGGATCAGCGGCTCCACAGCCACCTTGGCACACGCGCCGCCCACTACACGGGGCTCTGGTGGCACCCAAGCGCCACCAGAGCCTTCGTGTGGCTGGAAAAGGAGCCGTTGGCAAACGAGACGTGGCCGGAGACCTCCCCGCCATTCAGGGTCTCCGGCAACACGTCTTCGTTCAAGTACACGTGCTGGTACGGCTCCCGGTCGGCGATTCGCATAGCGCGGATAGTGAAGGAGAGCTTCGACCTTGGGTTGGACAATGTGAGGTGGTTCGTGATGGGTGACGATGACACCGTGTTCTTCCCCGACAACCTCGTCACGGTGCTGTCCAAATATGACCACAACACAAATGTACTACGTTGGGGAATTCGGAGACGGCGGAGCTTGTCAAGATTTTTGGACGGTTGCATTGATCGATATGCTCGGTACTATGGTTCTGATCAGAAAATTCAGAGTTGTATTAGTGAGATTGGTGTTCAGATAACCAAAGAGCCTGGTTTTCATCAGGTCGATATACGTGGGAACCCATATGGGTTATTGGCGGCGCACCCGGTAGCACCACTGGTGTCGTTACATCACTTGGACTACGTGGACCCAATTTTCCCCAACATGACCCGGATTGACTCCGTGAGGAAGTTGGTAATGGCTTACAAAACGGATCCGGGTCGGACCTTGCAGCGGAGTTTCTGCTACGACCCAAAACGGAATTGGTCAGTGTCGGTGTCGTGGGGCTACAGCGTTGAGCTGTATCCCTTTCTACCAACCGCCAGGGAGCTTGAAACGGCATTCAAGACGTTCAAGACATGGCGGAGTAGGAGCGATGGCCCGTTCACGTTCAACACCAGACCCGTTAACAGTGACCCGTGTGGAAAGCCCATATTGTATTTCCTGGATCGGGTTGATAACGTGGGCGGGGGACAGACCCGATCTAGTTACAAAAGATACGTCGACGTTTCGGGAAAAGAATGTGAGCGCCTTGATTACGCCCCGGCTTTGGCGGTTCAAAACGTCGACGTTTCTGCACCTCAATTTATGCCGCACTTGTGGAGAAAGGCGCCACGTAGACAATGCTGNGAGATAATCAACGGTGGAGATGGNGTGAACAGTGTGGTCCAGGTCAAGATCAGAGGGTGTAATCGGTTTGAGAGTGTGACTCCTCCTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02146	28650	31386	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT31

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002146s00039025.1	PF04646.7	DUF604	261	490	3.70E-91

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.935
SRR1783600	control	0.742
SRR1783602	moderate drought stress	0.462
SRR1811619	moderate drought stress	0.424

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.487
DRR006520	Root Summer glycyrrhizin high producing strain	0.584
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.252
DRR006524	Root Summer glycyrrhizin low producing strain	0.248
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.236
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.206

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.915
SRR2868004	Drought Stress (root)	1.282
SRR2967015	Control (root)	0.910

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.200
SRR9715740	Leaf	0.025
SRR9715741	Leaf	0.190
SRR9715739	Root	1.736
SRR9715742	Root	3.057
SRR9715743	Root	2.424

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.599
SRR8749028	MeJA induced 9h	0.251
SRR8749029	MeJA induced 9h	0.095
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.051
SRR8749032	Uninduced	0.027

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.188
SRR8400027	Control - Root	1.834