Gene detail

Gene detail information of Glyur002140s00029377.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G31860.1	6.00E-104	histidine biosynthesis bifunctional protein (HISIE)
NR	XP_004493105.1	0	PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic-like isoform X2 [Cicer arietinum]
COG	YP_001357554.1	7.00E-45	histidine biosynthesis bifunctional protein HisI [Sulfurovum sp. NBC37-1]
Swissprot	tr\|O82768\|HIS2_ARATH	1.00E-129	Phosphoribosyl-ATP pyrophosphatase (Precursor)
trEMBL	tr\|A0A072U2X9\|A0A072U2X9_MEDTR	0	Histidine biosynthesis hisIE protein {ECO:0000313\|EMBL:KEH23503.1}

Sequence

Transcript Sequence

>Glyur002140s00029377.1
AATTTTCAATTCTACTCAACGAAACAGAGTTGGGGTATGGGTGATTTAGCAAAGAAAGAAACAGAAAAGAGAGAGAGAGTGAGAATCGCTTGTTTTGTTTACGCTCATATTTTCTTTTTCCATTGTTGCCCTTTCGCTCATTTCTCTCATTCGTTCTCGCCATCGTNTCTAGCTGCCCGCCACCACGGGACGGTCTCGTTCATTCTCTATTTCTGAGTCAAGTGGGTCTAAGAGGCGTTTCAATTCAATTCAATGGCTGTTTCCTATGTTCACATGCTTCAATCTGCCAGAGGTTTCCACAAGTGCAACCTCTCCTTTTCCAGCCATGATTATCCCAGATGCAGTTACAAGACCCACCACTTAGCTTTTGCTTCTATGCACACATCTGACCCTAAGGTAGACTCATTGCTGGACAGTGTGAAATGGGATAACAAAGGTTTGGCTGTGGCAATAGCTCAGAATGTTGACACGGGAGCCATATTAATGCAAGGCTTTGCAAATAGAGAAGCCGTGGTTACAACCATATCTTCTCGCAAGGCCACATTCTATAGCCGGTCGCGATCAACATTGTGGACCAAAGGAGAGACCTCTAATAATTTTATCAATGTTCATGATGTCTTTCTTGATTGTGACCGTGATTCAATAATATACCTTGGGAAGCCTGATGGGCCTACCTGCCACACGGGGTCAGAAACATGCTACTATACATCAGTCTTTGACATATTAAAAGAGCAAGAGGCTGAAGAAAATAGATTGGCATTAACCTCTCTGTATGCATTAGAGTCAACAATCTCCGAGCGCAAGGCAGAGTTAGCAGAAGGAGAAAATGGAAAGCCTTCATGGACAAAGCNATTATTGCTTAATGATAAGTTGCTGTGCTCTAAAATCAGAGAAGAAGCAAACGAGTTGTGCCAAACACTAGAGAATAATGAGGACAAGTCACGTACTGCTTCAGAGATGGCTGATGTACTCTATCATGCCATGGTTCTGTTGGCACTGAAAGATGTCAAAGTAGAAGATGTTTTGCAGGTTCTCCGGCAAAGATTTTCCCAATCTGGTATCGAGGAAAAGAAAAGCCGCGCAACCCAGAAATCGGTGGAAAATTGAATGTTCTGTCAAGTTTACATTTTTCAAACAACATATTTAGCTTTTGGCGACTCATAGCCAAATGTACCATATAACTGTTATCCTTCATTTTCCAGTGATCAGCTTTACACATTTTTAAATGTTTTAAATGCATGCACATATATATAGCAAACTGCTAGAGTTCTTATGCTTTGGTGAACGGCCAAACGTGCACGAGCCCCTGTCTCGTCTATTTTGTGAAGGAAGGGGAAGGGGAAGGGGAAGGGGAAGGGGAAGGGGGTCAGAGGTGAAGGTGAGTATAGTGTTGATGTGGAAATAAATCCTACATGTCAGAGTTGGCATCATGTGGGTGAGATGAGTTGGACTTAAGTGAGTCACCACATCGGTCAACTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02140	41974	46031	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K11755	hisIE	EC:3.6.1.31 3.5.4.19	Biosynthesis of amino acids	map01230
			Histidine metabolism	map00340

Gene Ontology

biological_process
GO:0000105 histidine biosynthetic process

molecular_function

GO:0004635 phosphoribosyl-AMP cyclohydrolase activity

GO:0004636 phosphoribosyl-ATP diphosphatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002140s00029377.1	PF01502.13	PRA-CH	78	151	6.70E-29
Glyur002140s00029377.1	PF01503.12	PRA-PH	204	263	4.00E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	30.437
SRR1783600	control	30.457
SRR1783602	moderate drought stress	41.298
SRR1811619	moderate drought stress	40.898

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	41.246
DRR006520	Root Summer glycyrrhizin high producing strain	40.645
DRR006521	Root Winter glycyrrhizin high producing strain	27.936
DRR006522	Root Winter glycyrrhizin high producing strain	27.295
DRR006523	Root Summer glycyrrhizin low producing strain	27.704
DRR006524	Root Summer glycyrrhizin low producing strain	27.568
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.415
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.309

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.351
SRR2868004	Drought Stress (root)	27.282
SRR2967015	Control (root)	25.704

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.897
SRR9715740	Leaf	35.383
SRR9715741	Leaf	30.591
SRR9715739	Root	13.879
SRR9715742	Root	26.181
SRR9715743	Root	21.109

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	53.229
SRR8749028	MeJA induced 9h	20.122
SRR8749029	MeJA induced 9h	41.654
SRR8749030	Uninduced	21.698
SRR8749031	Uninduced	23.300
SRR8749032	Uninduced	31.944

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.416
SRR8400027	Control - Root	43.233