Gene detail

Gene detail information of Glyur002140s00029373

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G02060.1	3.00E-178	DEAD/DEAH box helicase, putative
NR	XP_004493106.1	0	PREDICTED: transcription-repair-coupling factor-like [Cicer arietinum]
COG	YP_007133537.1	6.00E-111	transcription-repair coupling factor [Stanieria cyanosphaera PCC 7437]
Swissprot	tr\|Q9SP32\|DCL1_ARATH	2.00E-06	Endoribonuclease Dicer homolog 1
trEMBL	tr\|G7KY98\|G7KY98_MEDTR	0	DEAD-box-like helicase superfamily protein {ECO:0000313\|EMBL:AES80749.2}

Sequence

Transcript Sequence

>Glyur002140s00029373.1
TAAAGATAATATTCTTCACAATATATATATCAGATATTTCTGGTGGAAACAAAACCCCTCCAAAACCCCCCATTTTCATCGGTGTTATCCTTCCCTTCCTCCCGAAGATTCAAACTTTTTCCAATGGCAGCCTGAATGCAAAACACCCCACCCTTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTTCTCCACTCCAATTCAATGGCTTCTCTCCTCCCAATTCCACAACACATCATTCCCACACCCGTCATCACCAACAAGCTCGGCTCTTCCCCAAAAACTTGGAGCCTCTTCATCCTCAACTACCCTTCATTACTACACCACAANAGCAACAGCAAGAGGCAAAGACATGTACCATTCTCCATCAATGCAGTNTACACCCAAGGCCTCTATGCCCCTTCACCAGTACCCTCATCCAAAACTGAGAAAACTGAGGTAGATAACGACCCCATCTCGTTGGTGAACGAGAGGGTTCGCCGCGAATACGGCAAGAGGGAGGTCTCATTAAGGACAGTGATGGATTCTGAGGAGGCTGAGAAGTANATAAAGATGGTGAAGGAGCAGCAGCAGAGGGGTCTGCAGAAGCTGAAGGGTGTCAATAGGGAAGGTGCTAAAGATGGTGCCTTTAGCTATAAGGTAGACCCTTATACACTTCGTTCTGGGGACTATGTTGTCCACAAGAAAGTCGGAATTGGGAGGTTTGTTGGGATCAAGTTTGATGTTCCTAAGAATTCNGATGAACCCACTGAGTATGTTTTCATTGAGTATGCTGATGGTATGGCTAAGCTNCCTGTTAAGCAGGCCTCTAAAATGCTCTATAGATACAGTCTTCCAAATGAAAATAAAAAGCCCCGGACATTGAGCAAGTTGAATGATACTAGTGTGTGGGAGAAAAGAAAGATTAAAGGGAAGGTAGCTATACAGAAGATGGTTGTTGACTTGATGGAACTCTATCTGCATAGGCTCAAACAGAGAAGGCCTCCCTATCCAAAGAGTCCTGCCTTGGCTGAATTCGCAGCGCAATTTCTTTATGAACCCACGCCGGATCAGAAACAGGCTTTTATTGATGTTGAAAGGGATTTGACAGAGCGGGAAACTCCAATGGACAGATTAATTTGTGGAGATGTTGGTTTTGGTAAAACTGAGGTTGCTCTACGTGCTATCCAATGTGTAGTCTCAGCTAGAAAGCAAGCCATGGTTCTGGCACCGACAATTGTTCTGGCAAAACAACATTTTGATGTTATTTCAGAGCGCTTTTCTGTATATCCTGATATTAAAGTTGGACTACTAAGCAGACTATTTCACTTATCCCAACTTGCAGACCAGAGCAGAGAAGGAAGAGTACTTGGAAATGATCAAGAATGGTGACCTAGATATTATTGTTGGGACTCACTCACTCCTAGGAAACCGCGTTGTTTATAACAATCTTGGCCTGCTTGTGGTTGATGAGGAACAGAGGTTTGGTGTCAAACAGAAGGAGAAGATTGCTTCTTTTAAAACTTCTGTGGATGTACTTACTTTATCTGCAACCCCTATACCACGAACTCTTTATTTAGCATTGACAGGGTTTCGTGATGCCAGTTTAATTTCAACTCCACCTCCAGAAAGAGTTCCTATCAAGACTCACCTTTCTTCATTCAGTAAGGACAAAGTAATATCAGCTATCAAGTATGAGCTGGACCGTGGTGGTCAAGTTTTTTATGTTCTGCCACGTATTAAAGGACTTGATGAAGCAATGGAATTTCTTGAAGAGTCATTCCCAGATGTGGAAATAGCCGTTGCCCATGGGAAGCAATACTCAAAGCAATTAGAGGATACCATGGAGAAGTTTGCTCTAGGTGAAATAAAAATCCTTATCAGCACAAATATAGTAGAAAGTGGGCTTGACATTCAAAATGCAAACACCATCATCATTCAGGATGTTCAACAATTTGGCCTTGCACAGTTGTACCAGTTGCGTGGAAGGGTTGGGCGGGCAGACAAGGAAGCATATGCATACTTATTTTATCCTGATAAAGGTCTGCTCTCTGATCAAGCATTGGAGAGGCTTGCAGCTCTTGAAGAGTGCCGTGAACTTGGTCAAGGCTTCCAACTAGCTGAGAGAGACATGGGTATAAGAGGTTTTGGTACTATTTTTGGCGAACAACAAACAGGAGATGTTGGAAATGTTGGGATTGATCTTTTCTTTGAGATGCTCTTTGAGAGTTTGTCCAAGGTTGATGATCACCGTATTGTAGCAGTTCCTTATCGCTCAGTGCAGAACCCTATGGAAATATTAAATGAAGCTGAGAGAGTTGCTGAGAAAGACATCTGGAGTCTGATGCAATTTACAGAGAATTTGCGCCGCCAATATGGCAAAGAGCCTCGCCCCATGGAGATTTTCTTAAAGAAGCTTTACTTGAGGAGAATGGCGGCTGATATAGGGGCTGAACTTCTATTAGAGCTACCAAAAGAACAACTTCTAAATTGGATCTTCAATTGCTTGGCTGAACTTCATGCTTCACTTCCTGCCCTCATAAAGTACTAGGTTCTTTACCCGGTCGATTCTGCCAACCTGTAAGTTGGAAACTTGACTTACTGCTTTCATCACAATTATATAAAATTGGGCGGATTTACGATGTCAAAAGGCCGTGAACTAACCGTGGCGGATGCAAAACAAGATTGTATTGCATGACTGACTTGACAGCACATGACATCAAAACAAATTGAGACTCAGTTGATACTATCATGATAACAATTCAGAGCACAAGANGCACATCAGAGAGGTTGGTTACAAGCATCTTGGGGTTGTCCAAATTGTGCTTCTGGTTTGCATGCATCATAGCAGAACATGGGCATGAAACATCAGAACCTGATCAGCTTCAATCTTGCACCCCATAAAACAACTTCACTTTCAAAAGCTAAATACACAATGGCCTAAAGTCCTCATCCACTAAACCTTTAATCAAAATATCCATAAATTCACCTTTTGTAAAGCATTACCACACACTCTTTTCCTCATTTTTTTGTTATCTTTGAAGGTTTCATTGAAGTTACCTGATCTGGAGAAATTCAATGTAAACTAGAAATCAGCATTATGAATGGTGCATTTTTTTTGTTGCATATTGTTAAGAAATATACTTGTATTCTTCATAGAAAGATTCTTTTAAATACATGTTTTCCCAATTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02140	25966	35872	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002140s00029373.1	PF00271.26	Helicase_C	137	209	1.20E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.543
SRR1783600	control	2.474
SRR1783602	moderate drought stress	3.663
SRR1811619	moderate drought stress	3.661

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.160
DRR006520	Root Summer glycyrrhizin high producing strain	2.132
DRR006521	Root Winter glycyrrhizin high producing strain	5.203
DRR006522	Root Winter glycyrrhizin high producing strain	4.920
DRR006523	Root Summer glycyrrhizin low producing strain	2.922
DRR006524	Root Summer glycyrrhizin low producing strain	2.813
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.296
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.202

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.766
SRR2868004	Drought Stress (root)	1.346
SRR2967015	Control (root)	1.646

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.398
SRR9715740	Leaf	25.910
SRR9715741	Leaf	7.154
SRR9715739	Root	0.038
SRR9715742	Root	1.077
SRR9715743	Root	1.080

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.153
SRR8749028	MeJA induced 9h	3.320
SRR8749029	MeJA induced 9h	2.842
SRR8749030	Uninduced	0.354
SRR8749031	Uninduced	0.280
SRR8749032	Uninduced	0.389

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.911
SRR8400027	Control - Root	2.920