Gene detail information of Glyur002135s00038897 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G27290.1 | 5.00E-108 | S-locus lectin protein kinase family protein |
| NR | KEH16806.1 | 0 | S-locus lectin kinase family protein [Medicago truncatula] |
| Swissprot | tr|O81832|Y4729_ARATH | 1.00E-128 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (Precursor) |
| trEMBL | tr|A0A072THU9|A0A072THU9_MEDTR | 0 | S-locus lectin kinase family protein {ECO:0000313|EMBL:KEH16806.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02135 | 27721 | 29091 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002135s00038897.1 | PF01453.19 | B_lectin | 75 | 193 | 4.10E-31 |
| Glyur002135s00038897.1 | PF00954.15 | S_locus_glycop | 219 | 329 | 6.30E-30 |
| Glyur002135s00038897.1 | PF08276.6 | PAN_2 | 350 | 418 | 1.50E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.900 |
| SRR1783600 | control | 0.874 |
| SRR1783602 | moderate drought stress | 1.079 |
| SRR1811619 | moderate drought stress | 1.112 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.581 |
| SRR2868004 | Drought Stress (root) | 10.844 |
| SRR2967015 | Control (root) | 4.906 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.048 |
| SRR9715739 | Root | 0.108 |
| SRR9715742 | Root | 0.323 |
| SRR9715743 | Root | 0.830 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.322 |
| SRR8749028 | MeJA induced 9h | 2.562 |
| SRR8749029 | MeJA induced 9h | 0.805 |
| SRR8749030 | Uninduced | 0.763 |
| SRR8749031 | Uninduced | 5.316 |
| SRR8749032 | Uninduced | 0.208 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.028 |
| SRR8400027 | Control - Root | 3.551 |