Gene detail information of Glyur002129s00040597 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G25500.2 | 2.00E-174 | Plasma-membrane choline transporter family protein |
| NR | AES97461.2 | 0 | plasma-membrane choline transporter family protein [Medicago truncatula] |
| trEMBL | tr|G7JYE2|G7JYE2_MEDTR | 0 | Plasma-membrane choline transporter family protein {ECO:0000313|EMBL:AES97461.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02129 | 9302 | 19007 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002129s00040597.1 | PF04515.7 | Choline_transpo | 139 | 441 | 2.10E-72 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.235 |
| SRR1783600 | control | 12.376 |
| SRR1783602 | moderate drought stress | 13.222 |
| SRR1811619 | moderate drought stress | 12.856 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.114 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.526 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.879 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.072 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.350 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.130 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.489 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.479 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.301 |
| SRR2868004 | Drought Stress (root) | 25.274 |
| SRR2967015 | Control (root) | 27.966 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.040 |
| SRR9715740 | Leaf | 5.073 |
| SRR9715741 | Leaf | 4.713 |
| SRR9715739 | Root | 11.442 |
| SRR9715742 | Root | 20.812 |
| SRR9715743 | Root | 21.409 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.932 |
| SRR8749028 | MeJA induced 9h | 14.190 |
| SRR8749029 | MeJA induced 9h | 12.295 |
| SRR8749030 | Uninduced | 7.265 |
| SRR8749031 | Uninduced | 5.593 |
| SRR8749032 | Uninduced | 5.943 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 29.219 |
| SRR8400027 | Control - Root | 30.852 |