Gene detail

Gene detail information of Glyur002123s00028288.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G55130.1	1.00E-169	co-factor for nitrate, reductase and xanthine dehydrogenase 5
NR	XP_004491427.1	0	PREDICTED: adenylyltransferase and sulfurtransferase MOCS3-like [Cicer arietinum]
COG	YP_001939307.1	5.00E-106	Bifunctional enzyme, contains ThiF/HesB family NAD/FAD binding and Rhodanese similarity domains [Methylacidiphilum infernorum V4]
Swissprot	tr\|Q9ZNW0\|MOCS3_ARATH	0	Molybdopterin-synthase sulfurtransferase {ECO:0000255\|HAMAP-Rule:MF_03049}
trEMBL	tr\|V7B929\|V7B929_PHAVU	0	Adenylyltransferase and sulfurtransferase MOCS3 {ECO:0000256\|HAMAP-Rule:MF_03049}

Sequence

Transcript Sequence

>Glyur002123s00028288.1
CAAAAAAAAAAGATTCTTAAATGAAAATCCCGAACCTTGTTAAGGATGCCACGACGGCACAGTAACATTCGAATAGGAAACCCTGGTTTTGTTTGGTGTTCGCCGTTTGGCGCAGANAAAAAATAAAACCAAAGTCAACACTAGTTCGTTCTTCATGTTTTTGAAGCTGAACTGAACTCAACACTCAACACTTGTTCGTTCGTTCGTTCCCTTCAGTCGAATCTCAATGTCGTCGGCGTCAGAGATAATTCGGGAACTGGAATCANTGAAGGACGCAAAGAGCGAAATCGAGCACAAAATCTCTGTGCTGGAAGCTCAACTGAAGGAGGTTAATCTCCAAAACGACGCCGCACCCAATGGCTCTTCATCACCGTACACCACAAACAGATTGGAACCTCACATGATCCACAGATACAGTCGTCACCTCGTCCTTCCTTCCTTTGGGGTTCAAGGGCAGGAAAATCTGTTGAAGTCATCAATTTTAGTTGTGGGAGCTGGAGGATTGGGTGCTCCTGCATTGTTATATTTCGCAGCTTGTGGTGTTGGTCGCTTGGGTATTGTTGATAATGACAAGGTTGAGCTTAACAACATGCATAGACAGATTATCCATATCGAAGCATATATTGGTCAGCCGAAAGTGAAATCTGCTGCTGCTGCTTGTCGCTTGGTCAACTCCTCAATTAAAGTTGTGGAACATGAAGAAGCTTTGCGGACTTCCAATGCTTTGGAAATTCTTAGCAAGTATGATATAATAGTAGATGCAACAGATAATGCTCCTACTCGGTATCTGATCAGTGACTGCTGTGTGGTACTAGGAAAGCCCCTTGTATCAGGTGCTGCACTGGGATTGGAAGGGCAGCTCACTGTCTACAATTACAACGGTGGTCCTTGCTATCGATGTCTCTTTCCAACTCCACCACCTAGAACAGCNTGCCAAAGTTGTGCCGAAGGTGGAGTACTAGGAGTAGTTCCTGGTATTATTGGCTGTCTTCAAGCTCTCGAGGCAATTAAGATTGCAGCTTCTGTTGGTGAACCACTCTCCGGAAGGATGCTTCTCTTTGATGCGTTGTCTGGACGGATCCGTGTTGTCAAAATCAGAGGAAGGTCCACACAATGTGAAGCTTGTGGAGAAAATGCAACATTTACCCAGCAGCACTTCCGAGAATTTGATTATGAGAAGTTCACTCAGACTCCCTTGTGCGTGCCTCCTTTGAAGTTAAATCTACTTCCCACTGAATCAAGAATCAGCAGCAAGGAGTACAGTGAAATACTTGTTAACAAGGAACCACATGTGCTGGTTGATGTTAGACCAGCTCACCATTTCAAGATTGTATCTCTNCCCAATTCCCTCAACATTCCACTCTCAACTTTAGAGGGTAGGTTGCCTGAGATATCATCAGCTTTGAAGAAAGAGGAAGAGGACAGAGGTGTGGTTTCTGGGTCAAGTGCACAATTGTATGTAGTGTGCAGAAGGGGAAATGATTCTCAAAAGGCTGTTCAATACCTTCACAAAATGGGCTTAAATTCTGCCAAGGATATTGTTGGGGGCTTGGAGTCTTGGGCCGACAATGTGGATCCCAACTTCCCCACATATTAGCTCTCTAGTGTAGTTACACTTTCATTAATAGCACGTTTGGTTTCGCGGTGAGAAGGCCCTGATCGCACGTCCACCGTGAAGCTACTCTCACAAGCTTCCGAGGTGGGAAGGCTCTGGGCGTGGTTTTCACGTTTTCCAAACACACGCTGAGTTATACTTCTGACTTCAAATNATTTCTTTTTATTATATTTTATTAGGGAAACTGCTTTTATTTTTCCCTGTATTTTACATGTTAATACTTCTGACTTGTTTGTAGTCAATACTCTGGGCCTTGAAATATCAGAGTTCTTAAAGTACATCTTTGCATCGGTTACAGTTTAATGGATGGATGGGATGATCATAAAAAATGGGTCCACAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02123	7805	13562	+

Gene family

Gene family	subfamily
Ubiquitin Family	ThiF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K11996	MOCS3, UBA4	EC:2.7.7.80 2.8.1.11	Sulfur relay system	map04122

Gene Ontology

biological_process
GO:0002143 tRNA wobble position uridine thiolation

cellular_component
GO:0005829 cytosol

molecular_function

GO:0004792 thiosulfate sulfurtransferase activity

GO:0008641 small protein activating enzyme activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002123s00028288.1	PF00899.16	ThiF	82	213	2.60E-40
Glyur002123s00028288.1	PF05237.8	MoeZ_MoeB	219	303	6.80E-32
Glyur002123s00028288.1	PF00581.15	Rhodanese	343	447	4.30E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	36.853
SRR1783600	control	37.214
SRR1783602	moderate drought stress	37.908
SRR1811619	moderate drought stress	37.415

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	35.063
DRR006520	Root Summer glycyrrhizin high producing strain	33.972
DRR006521	Root Winter glycyrrhizin high producing strain	19.043
DRR006522	Root Winter glycyrrhizin high producing strain	18.183
DRR006523	Root Summer glycyrrhizin low producing strain	28.709
DRR006524	Root Summer glycyrrhizin low producing strain	28.409
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.815
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.019

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.759
SRR2868004	Drought Stress (root)	40.493
SRR2967015	Control (root)	42.159

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.468
SRR9715740	Leaf	23.991
SRR9715741	Leaf	29.116
SRR9715739	Root	28.106
SRR9715742	Root	32.221
SRR9715743	Root	27.322

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	30.648
SRR8749028	MeJA induced 9h	25.657
SRR8749029	MeJA induced 9h	19.634
SRR8749030	Uninduced	6.360
SRR8749031	Uninduced	2.798
SRR8749032	Uninduced	5.034

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.032
SRR8400027	Control - Root	36.963