Gene detail information of Glyur002123s00028285 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G32990.1 | 1.00E-81 | glycosyl hydrolase 9B8 |
| NR | XP_003518530.1 | 3.25E-133 | PREDICTED: endoglucanase 11-like [Glycine max] |
| COG | YP_007159459.1 | 3.00E-26 | Cellulase [Anabaena cylindrica PCC 7122] |
| Swissprot | tr|O48766|GUN11_ARATH | 3.00E-103 | Endoglucanase 11 (Precursor) |
| trEMBL | tr|K7KBH6|K7KBH6_SOYBN | 1.00E-133 | Endoglucanase {ECO:0000256|RuleBase:RU361166} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02123 | 640 | 1296 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH9 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002123s00028285.1 | PF00759.14 | Glyco_hydro_9 | 6 | 198 | 2.80E-54 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.180 |
| SRR1783600 | control | 8.975 |
| SRR1783602 | moderate drought stress | 0.827 |
| SRR1811619 | moderate drought stress | 0.815 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.482 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.137 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.828 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.505 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.142 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.282 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.381 |
| SRR2868004 | Drought Stress (root) | 0.820 |
| SRR2967015 | Control (root) | 1.659 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.424 |
| SRR9715740 | Leaf | 0.193 |
| SRR9715741 | Leaf | 0.398 |
| SRR9715739 | Root | 2.112 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.289 |
| SRR8400027 | Control - Root | 7.981 |