Gene detail

Gene detail information of Glyur002122s00037776

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45280.1	1.00E-126	RAS associated with diabetes protein 51C
NR	XP_004506531.1	0	PREDICTED: DNA repair protein RAD51 homolog 3-like isoform X1 [Cicer arietinum]
COG	NP_146978.1	3.00E-42	DNA repair and recombination protein RadA [Aeropyrum pernix K1]
Swissprot	tr\|Q8GXF0\|RA51C_ARATH	2.00E-166	DNA repair protein RAD51 homolog 3
trEMBL	tr\|G7JS17\|G7JS17_MEDTR	0	DNA repair and recombination protein RadA {ECO:0000313\|EMBL:AES91281.1}

Sequence

Transcript Sequence

>Glyur002122s00037776.1
ATGGAGATTGCTATGCTACCAATCTCTGCATCNAAGAGAGGAAAGCTCTTAGCAGCTGGTTACACCACACTCGACGCCATTGCTCGCNCCTCCTCTGCCCACCTTGCTCAAGATATAGAGGTTTCTGAGAATGAAGCTTCAGAAATTCTGGAATTTGCAATCAAAACTAGTGCTTTGGAAAGGCCAAGTGGGAGTAGTAACACTAGTGTTGTTGATGGTGGTCAGACTGCTTGGGATATGCTCAATGAGGAAAANTTTTCTTCTTGCATTACCACATCTTGTGCGGATCTGGATAACATCCTTGGTGGAGGGATTAGTTGCAAAGAAGTCACTGAAATAGGTGGAGTTCCAGGCATTGGTAAAACACAAATCGGGATTCAACTTGCAGTAAATGTTCAGATTCCGCTAGAATATGGTGGCCTAGGTGGGAAGGCAATATACATAGGAAGCTTTATGGTTGAACGTGTTCTACAAATTGCTGAAGCATGCATAGAAGACATGTCAGAATATAGCCACCACTTTCACAGGGATACTCAAGCTTGTGAAGTTAAAATGCACCCAAATAGTATCTTGGAAAATATATTCTATTTTCGTGTTTGCAGCTATACTGAACAAATTGCTTTGGTAAATTACTTAGACAAATTCATCACAGAGCATAAAGATGTAAAGATCATCATTATTGACAGTGTTACTTTCCACTTTCGCCAAGACTTTGATGATATGGCTCTCCGGACTCGATTANTTAGTGAAATGGCTTTGAAGTTGATGAAGCTTGCAAAAAAGTTCTGTTTGGCTGTTGTTATGTTGAATCAAGTGACAACTAGGCATATTGAAGGTTCATTTCAGTTGACCCTTGCCCTGGGTGATAGCTGGTCGCATTCNTGCACAAACCGGATCATCTTATATTGGAATGGCGATGAACGACATGCGTTTATTGACAAGTCCCCTTCTCTTAAATCAGCTTCGGCGNCATATTCTGTGACCACTCGGGGGATACGTAATTCTACTCCAAGCAGTAAACGAATCAAGATGGTGTGAGATTTTTGGGTAGAAAGACTGTCTATACAACTCAACCTTCCCTCACTCTTTTTGCTTGTTCCTTTTTTTTCAATTTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02122	1872	5624	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006281 DNA repair

molecular_function

GO:0003677 DNA binding

GO:0005524 ATP binding

GO:0008094 DNA-dependent ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002122s00037776.1	PF08423.6	Rad51	77	334	9.00E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.703
SRR1783600	control	7.799
SRR1783602	moderate drought stress	9.302
SRR1811619	moderate drought stress	9.303

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.601
DRR006520	Root Summer glycyrrhizin high producing strain	8.268
DRR006521	Root Winter glycyrrhizin high producing strain	11.364
DRR006522	Root Winter glycyrrhizin high producing strain	11.286
DRR006523	Root Summer glycyrrhizin low producing strain	5.913
DRR006524	Root Summer glycyrrhizin low producing strain	5.838
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.292
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.503

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.754
SRR2868004	Drought Stress (root)	6.907
SRR2967015	Control (root)	7.607

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.372
SRR9715740	Leaf	4.424
SRR9715741	Leaf	3.052
SRR9715739	Root	0.953
SRR9715742	Root	4.069
SRR9715743	Root	3.453

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.713
SRR8749028	MeJA induced 9h	3.345
SRR8749029	MeJA induced 9h	4.193
SRR8749030	Uninduced	2.521
SRR8749031	Uninduced	1.020
SRR8749032	Uninduced	1.278

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.058
SRR8400027	Control - Root	14.730