Gene detail

Gene detail information of Glyur002121s00033330

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G48100.1	8.00E-178	Laccase/Diphenol oxidase family protein
NR	XP_003603035.1	0	Laccase-15 [Medicago truncatula]
COG	YP_003996662.1	5.00E-25	multicopper oxidase type 3 [Leadbetterella byssophila DSM 17132]
Swissprot	tr\|Q84J37\|LAC15_ARATH	0	Laccase-15 (Precursor)
trEMBL	tr\|G7J6C9\|G7J6C9_MEDTR	0	Laccase {ECO:0000256\|RuleBase:RU361119}

Sequence

Transcript Sequence

>Glyur002121s00033330.1
CGTACACAAATGCTTTCATAACTCAGAAACCATTAGCAGTACAGCATCATAGAAGGAATTGATAAACATTTTCTTTCATGAAAATGTCGTCTTGCAAGGAACTCTTCCTCCAAATTATGTGCTGTTTTTCCTTGATTGCTTTTAGTTCTCAAACGCTAAGTCACTACAATTTTGTTGTGAAAGAAGCACAGTACACAAGACTCTGTTCAACAAAAAACATATTGACTGTGAATGGGAAATTCCCAGGGCCAACTCTAAGAGTCCACAAGGGTGATACAATCTATGTTAATGTTTATAACAAGGGAAAATACAATATAACTTTACACTGGCATGGAGTGAAGCAGCCAAGGAATCCATGGACAGATGGTCCTGAGTACATTACTCAGTGCCCCATCCAACCAGGAGGGAAATTCAGGCAAAAGGTGGTCTTTTCAGAAGAGGAAGGAACCTTATGGTGGCATGCTCATAGTGATTGGACAAGAGCAACTGTCCATGGGGCTATCAATATCTACCCAAGAAAGAATAGTACCTTCCCTTTTCCCAAACCTCATGCAGAGATACCCATTATATTTGGAGAATGGTGGAAGAATGATGTCAACAAGGTCCATACAGAATCTCTTGAAACTGGAGGAGCACCAAACATATCTGATGCTATCACTATAAATGAAACCTTCAAGTTAAATGTAGATCGAGGCAGGACATATCTTCTTCGCGTTGTTAACGCCGCGATGAATCTCATTCTCTTTTTCTCTGTTTCCAAACACAACCTCACTGTTGTTGGTGCTGATGGCGTGTACACCAAGCCAATGACAAGTGATTACATNTGCATATCTCCGGGACAAACAATGGATGTGTTGTTACATGCCAATCAAGAACCAAATCACTACTATATGGCTGCAAGGGCATATTCAAGTGGGGTTCGAATTGCCTTTGACAACACAACAACAACTGCAAGACTCCAATATAGTGACAATTACACTCCACCTTCATCTCCTTCATTACCATATCTTCCCAACTACAATGATACGCAAGCAGCTTTTGACTTCATCAGAAGCATTAGAGGCTTACCAGAGAAATACTCTCATAAAGTCCCAAAAAACATCACCACTCATATAGTGACCACAATTTCTGTTAACACATTTCCATGCCCCAATGACCAATCATGTCAAGGACCAAATGGAACCATTTTTGCTTCTAGCATGAACAACATAAGTTTTCAAACCCCTACCTTTGACATACTAGAAGCCTATTACTATCATATCAATGGGGTATTCGAAAAGGGATTTCCAAGTTTCCCACCGTTTATGTTTAACTTCACTGCAGATATTTTGCCTCTGACCCTGAATACACCGAATCGAGGGACTAAAGTTAATGTTTTAAAGTATGGCTCAACTGTGGAAATTGTTTTCCAAGGGACAAATGTGGTTGCAGGGATAGACCATCCTATGCACCTCCATGGATTCAGTTTCCATGTTGTTGGATATGGGTTTGGCAATTTCAACAAAAGTAAAGATCCAATGAATTACAATCTCATTGATCCTCCTCTTTTGAATACAGTTATTGTTCCTGTAAAAGGTTGGGCTGCCATCAGGTTCGTGGCCACCAACCCTGGAGTATGGTTCATGCATTGCCATCTAGAACGCCACCTCTCTTGGGGCATGGAAACTGTCTTTATTGTGAAGAATGGGAAATTCTCAAATGAAACATTACCACCTCCGCCTTCTGACATGCCCCCATGTTGATCAATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02121	9729	12168	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0046274 lignin catabolic process

GO:0055114 oxidation-reduction process

cellular_component
GO:0048046 apoplast

molecular_function

GO:0005507 copper ion binding

GO:0016491 oxidoreductase activity

GO:0052716 hydroquinone:oxygen oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002121s00033330.1	PF07732.10	Cu-oxidase_3	34	148	1.50E-40
Glyur002121s00033330.1	PF00394.17	Cu-oxidase	161	298	3.60E-33
Glyur002121s00033330.1	PF07731.9	Cu-oxidase_2	423	537	9.50E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.447
SRR1783600	control	21.695
SRR1783602	moderate drought stress	25.623
SRR1811619	moderate drought stress	25.494

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.437
DRR006520	Root Summer glycyrrhizin high producing strain	7.167
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.325
DRR006524	Root Summer glycyrrhizin low producing strain	1.309
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.999
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.840

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.091
SRR2868004	Drought Stress (root)	38.106
SRR2967015	Control (root)	26.718

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.786
SRR9715740	Leaf	1.352
SRR9715741	Leaf	0.961
SRR9715739	Root	0.869
SRR9715742	Root	11.080
SRR9715743	Root	9.474

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.027
SRR8749031	Uninduced	0.072
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	60.687
SRR8400027	Control - Root	121.471