Gene detail

Gene detail information of Glyur002121s00033328

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G09970.1	3.00E-172	cytochrome P450, family 78, subfamily A, polypeptide 7
NR	KEH43601.1	0	cytochrome P450 family 78 protein [Medicago truncatula]
COG	NP_241445.1	2.00E-25	cytochrome P450 hydroxylase [Bacillus halodurans C-125]
Swissprot	tr\|Q9FIB0\|C78A7_ARATH	0	Cytochrome P450 78A7
trEMBL	tr\|A0A072VPL1\|A0A072VPL1_MEDTR	0	Cytochrome P450 family 78 protein {ECO:0000313\|EMBL:KEH43601.1}

Sequence

Transcript Sequence

>Glyur002121s00033328.1
CACAAAACAAATTAATTCAATGTGCTTGGTCTTGTTTTCAAAACAGGATTTATTTATTGCGGGAAGCGACACTTCAGGATCAACAACAGAATGGGCAATGGCAGAGCTTCTACGGAACCCAGAAGTAATGCAGAGAGCAAGAGAGGAAGTGATCCAAGTGATTGGTAGTGGCACCTCCAATGAAGTCAAAGAATCAGACATCCATAGGCTTCCATACATCCAAGCAATTGTGAAAGAAACCCTTCGCCTTCATCCACCCGTACCCCTTCTCTTGCCCTATGTTGCGGGAAATGATGTTGAAGTAAATGGCTACACCATTCATAAAGGAAGCCAAGTCTTGATAAATGCATGGTCCATTGGTAGAAACCCAGACTTTTGGGCCGATCCATTGTCATTTCGGCCCGATAGGTTTATTGGGTCCAACATAGATTTCAAGGGCCGGGATTTTGAGTATTTGCCCTTTGGTGCTGGCAGGAGGATTTGTCCTGGTCTCCCATTGGCTAATAGGATGATCAATTTGATGCTGGCTACGTTGCTACATTCTTTTCAGTGGGAGCTTCCTCAGGGGATCACTCTTGAAACGCTTGACATGAGTGAGCATAAAATGGGTTTAGCTTCAACATCACTAGACACAAGCTGGTGGGTGTTCACACTTCCAGCCATAGCAGGAACACAAAACAACAACTTGCTCAACAATCCACTCCTTATAATCCTACTTGCACTTCTCTCCATCGCGTTTCTAACATGGGCTATCCCAAAAGGAGGAGGAGGAGGAGGATTAGCATGGAGAAACGGTAGGAACCAAATGGGTGAAATCCCTATCCCAGGACCCAAAGGCCTCCCAATCTTTGGCATGTTATTCAACCTAGGCCATGGCCTACCTCACCGCACACTCGCCTCCGTGGCTTCCACTCTCTCAGCCACAAAACTCATGGCCTTCAGCTTGGNCTCAACCCCTGTAGTTGTAACCTCAAACCCTCACATGGCGCGTGAGATTTTGAACTCGCCACACTTCGCCGACCGTCCCATTAAGCAATCCGCTAAGAGCCTCATGTTCACACGTGCCATTGGATTTGCACCGAACGGCACCTATTGGCGTTTGCTCCGTAGGGTTGCGTCCACCCACCTCTTCTCTCCCCGGCGCATCGTAGCCCACGAGGCCGGTAGAAGGCTAGATTGCGCTGTTATGTTGAGTTCCGTGGCTCGTGAACAATCCCAACACGGATTTGTTTCCCTTAGGAAACACCTTCAAGATGCGGCTCTTAACAACGTTATGGGAACTGTCTTTGGAAGAAGGTACAATAATGTCCGAGGACGAGGAGAGTGTTGTGATGGCGAAGAGGTTGAGGAGTTGCGTGAGATGGTGAGGGAAGGGTTTGAGCTGTTGGGAGCGTTTAACTGGTCTGATTATGTGTCTTGGATTGGCTTCTNTTATGACCCTTGTCGGGTTCGTGAACGGTGCTTGGCTCTCGCTCCTCGTGTTAAGGAATTTGTCAAGAAGATTTTGGAGGAGCACNGTGTTGTTATGGCTCCGTCCAAGGAGGTCTCTGACGACTCCGACTTTGTGGATGTTTTACTCTCTCTTGATGGGGATGAGAAGCTCCAAGACGATGACATGATTGCCATTTTATGGGAGATGATATTTCGTGGCACGGATACAACAGCACTTCTCACCGAGTGGGTAATGGCTGAGCTTGTTTTGAACCAAGGAGTCCAGAAAAGGCTTNGTGACGAGCTTGACAGGGTTGTGGGAGACAAAGGTGGTGACGTCGATGTTACAGATGCTGACGTCANGAAAATGCCATACCTCGAAGCCATCGTGAAGGAGACACTGCGACTGCACCCAATCGGGCCCCTACTTTCGTGGGCACGATTGTCCACGTCAGATGTCCAGCTCAGCAACGGGATGGTGGTCCCATCCAACACCACAGCAATGGTTAACATGTGGGCCATAACCCACGACCCCAGAGTGTGGAAGGAGCCATTTGCGTTCAAGCCAGAGAGGTTCGTGAAGAGTGAGGGAGGGGTTGAAGTTGATGTGAGGGGTGTTGACCTCAGGCTCGCACCGTTTGGAGCTGGACGTAGGGTTTGCCCCGGTAAGAACCTTGGCCTTGTGACCGTGAGCCTCTGGGTGGCTAGGTTGGTTCNTAAGTTTCAATGGTTCCAAGACATGGCTAACCCGGTTGACCTCACTGAGGTTCTCAAGCTATCTTGTGAGATGAAGAACCCCCTCAAAGCTGTGGCTATTCCTAGGGTTGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02121	547	7803	+

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP78A7

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002121s00033328.1	PF00067.17	p450	10	193	9.10E-65
Glyur002121s00033328.1	PF00067.17	p450	269	717	6.30E-77

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.298
SRR1783600	control	5.263
SRR1783602	moderate drought stress	5.207
SRR1811619	moderate drought stress	5.269

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.563
DRR006520	Root Summer glycyrrhizin high producing strain	3.902
DRR006521	Root Winter glycyrrhizin high producing strain	1.768
DRR006522	Root Winter glycyrrhizin high producing strain	1.720
DRR006523	Root Summer glycyrrhizin low producing strain	1.374
DRR006524	Root Summer glycyrrhizin low producing strain	1.282
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.144
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.175

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.193
SRR2868004	Drought Stress (root)	7.353
SRR2967015	Control (root)	5.965

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.195
SRR9715740	Leaf	0.137
SRR9715741	Leaf	0.189
SRR9715739	Root	12.307
SRR9715742	Root	6.734
SRR9715743	Root	7.698

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.925
SRR8749028	MeJA induced 9h	1.042
SRR8749029	MeJA induced 9h	0.707
SRR8749030	Uninduced	0.769
SRR8749031	Uninduced	0.399
SRR8749032	Uninduced	1.252

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.706
SRR8400027	Control - Root	4.692