Gene detail information of Glyur002113s00042685 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54510.1 | 0 | Auxin-responsive GH3 family protein |
| NR | KEH19704.1 | 0 | indole-3-acetic acid-amido synthetase [Medicago truncatula] |
| COG | YP_003444757.1 | 6.00E-25 | alpha-L-glutamate ligase [Allochromatium vinosum DSM 180] |
| Swissprot | tr|Q9LSQ4|GH36_ARATH | 0 | Indole-3-acetic acid-amido synthetase GH3.6 |
| trEMBL | tr|A0A072TQB1|A0A072TQB1_MEDTR | 0 | Indole-3-acetic acid-amido synthetase {ECO:0000313|EMBL:KEH19704.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02113 | 28439 | 31290 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002113s00042685.1 | PF03321.8 | GH3 | 18 | 576 | 2.50E-196 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 38.447 |
| SRR1783600 | control | 38.352 |
| SRR1783602 | moderate drought stress | 34.021 |
| SRR1811619 | moderate drought stress | 33.109 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.207 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.227 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.060 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.029 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.120 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.120 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.305 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.337 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 198.787 |
| SRR2868004 | Drought Stress (root) | 188.049 |
| SRR2967015 | Control (root) | 131.646 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.852 |
| SRR9715740 | Leaf | 0.260 |
| SRR9715741 | Leaf | 0.651 |
| SRR9715739 | Root | 46.322 |
| SRR9715742 | Root | 20.810 |
| SRR9715743 | Root | 29.769 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.795 |
| SRR8749028 | MeJA induced 9h | 10.324 |
| SRR8749029 | MeJA induced 9h | 3.939 |
| SRR8749030 | Uninduced | 5.032 |
| SRR8749031 | Uninduced | 0.764 |
| SRR8749032 | Uninduced | 1.909 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 77.637 |
| SRR8400027 | Control - Root | 61.179 |