Gene detail

Gene detail information of Glyur002112s00040765

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G09160.1	4.00E-131	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein
NR	XP_004506377.1	0	PREDICTED: patellin-2-like [Cicer arietinum]
Swissprot	tr\|Q56Z59\|PATL3_ARATH	1.00E-162	Patellin-3
trEMBL	tr\|Q9LEN5\|Q9LEN5_CICAR	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAB95829.1} (Fragment)

Sequence

Transcript Sequence

>Glyur002112s00040765.1
CAAAAAATATTAAAGATGTAAAAATGAATGAAAAAATGAAAATAAAAAGGGAGCAGGAGAAGGAGGAGATAGAGGTGGAAATGGGCCCACAAAGTGATGTACCTGCTGGCATACAGACTGGTTCTTCCCATCATGCATCAGGATTCATACCAACAACAACAACCAAACCATCCCTTGTTTTAGACCCCCACCCCCCCTGCCTTATTACTCATATCACATCTGCTTCTCTCAACTTTCACCTTCAACAACAACTACTATAACTCACTCTCCTTTCCTTTCTTCCTAATTATATTCAACTTCATATTCTTTTCTCCACCACCATCATCATCTAATAATCCATGGCTGAGGAATCCCAAAAACCAGCTGAAGAAGTGGTTACCACAACAACCACCTTGGACACTGCAGAAAAGTCAGAGCCACCACCACCAGCAACTGAAGAAGTTGTGGCTGCTGATAAGGGCCACCCTGCAGAGCCAGAGAAGCCAGCAGCAGCAGCAGCTGCAACTGAAGAAGTAGTGGCGGCGGTGGAAGCAGAGGAGAAGGAGAAGCCCCAAANCGCCGCTACTGATGGCAAGATTTCCCAATCGGTTTCTTTCAAGGAAGAGACCAACGTGGCCTCAGAGCTCCCCGAAGCGCAGAAAAAAGCCCTCGATGAGCTCAAACAGCTTATTCAAAACGCGCTTAACAAACACGAATTCTCTGCTCCGCCACCACCTCCTCCAAAGGCCCCCGAGGAAAAAAAACCCGAAGAAGTAGAAGAAAAGAAAGAAGAGAAAAAACCCGAAGAAGAAAAGAAGGAAGAGAAAAAGGCTGAAGAAGTGGCAGAAGAAGAAAAGAAGGGAGAGAAAAAAGCCGAAGAAGTGAAAGAAGAAGAAAAGAGAGAGGAAGAGAAAAAAGCTGAAGAAGTGAAAGAAGAAGAGAAGAAAGAAGAAGAGAAACCGGTTTCAAGTTCCGAGGAACCTAAAACCGAAGAAAAGAAACCGGTTTCAATTGTGGAAGGGGACGGTGAAAAGACGGTGGAAGCGATTCAAGAGAGCATAGTATCAGTGACAGTGGCAGTAACTGAAGGTGGAGAAGAAGCGAAGAAGGAGGAAACAGTTGTAACTGAAGCAGTTACTGAAGCTGACGTGGCAGTGGAAGTTGCTCCTTCTGCGCCAGAGGAAGTTGAGATATGGGGAATTCCCCTGCTTTCAGACGAGAGGAGCGACGTGATTCTCCTAAAATTCCTTCGAGCGAGGGATTTCAAGGTGAAGGAAGCATTCACGATGATAAAGAACACGGTGCGGTGGAGGAAGGAGTTCGGTATCGAATCACTCCTCAACGAGGATCTAGGTACCGATTGGGACAAGGTGGTTTTCACTCACGGTTACGACAAAGAAGGACACACCGTTTGTTACAACGTGTTTGGGGAGTTTGAGGATAAGGAGCTTTATAACAAGACCTTCTCTGATGAGGAGAAGAGGGACAAGTTTTTACGGTGGAGGATTCAGCTTCTGGAAAAGAGTGTTAGGAAGCTTGAATTCTCTCCCTCTGCTGTATCTACTATTGTTCAGGTTAATGATCTTAGGAACTCACCTGGGCTTGGTAAGAGGGAGCTTAGACAGGCTACCAATCAGGCACTTCAGATTCTTCAGGATAACTACCCTGAATTCGTAGCCAAACAGATTTTTATCAATGTTCCTTGGTGGTACCTTGCCTTTTCTAGGTTTATCAGTGCTTTCCTGACACAGAGGACCAAGAGCAAATTCGTATTTGCTGGTCCATCCAGATCTGCTGATACCCTTTTCAAATATATAGCTCCGGAGCAAGTGCCAGTTCAATATGGTGGGCTGAGCAGAGAGGGTGAACAGGAATTCACCACTGCCGACCCTGCTACTGAGAAAAGCAACCTGGTTTGGGAAGTCCGAGTTGTGGGATGGGATGTAAACTATGGAGCAGAATTTGTGCCTAGTGCTGAGGATGGGTACACTGTGATAGTACAGAAGAACAGGAAAATTACCCCAGCTGATGAAACAGTAATTAGCAACAGCTTCAAAGTTGGTGAACCGGGCAAGGTTGTACTCACCATAGATAACCAAACATCCAAGAAGAAGAAGCTCCTCTACAGGTCCAAGACCATACCCATCTCTGAGTAATTAAAGCCTTTAAGGGGAAGAATGTCTAAATTCCCTTTAAGGGTTGTTTTGTATTCATTACAAAGACAATAACATTGTGAAAGTTCTGGGGTGATGGGGGAGTTGATTCTTTTATACAGGGGGTTATATATTTTGTTCATTTGGTTTGTAAATTATATTTTGTTTCAAAGTGGGGTTGGGGCAATTTTATNTCTTTATAGTAATGTGGTATTTTGTTCATTGTTTTTGGAATTGGATCATGAAACCTTTGCTGCTGCTTGGAAATTTCTGAGGTGTGCATGAATTGGAGGAATTAAGGAGGGGTGGAGTGGAACACTTGATCGCGGTTTCATTCGTAGAACAAAAAATGGATATGTCTCTATGGACTGTGGAAGTCAAAAACTGTTTGCATTTGTAATACTCTTATATATGGTCGTAATTAAGGTTTGTTTAAATGTGATGATCATGTATTACTTTATTCCCGTAAATAATCAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02112	17665	21131	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002112s00040765.1	PF03765.10	CRAL_TRIO_N	284	314	1.30E-08
Glyur002112s00040765.1	PF00650.15	CRAL_TRIO	337	497	3.40E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	274.486
SRR1783600	control	275.460
SRR1783602	moderate drought stress	324.007
SRR1811619	moderate drought stress	321.693

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	313.318
DRR006520	Root Summer glycyrrhizin high producing strain	307.589
DRR006521	Root Winter glycyrrhizin high producing strain	340.818
DRR006522	Root Winter glycyrrhizin high producing strain	331.146
DRR006523	Root Summer glycyrrhizin low producing strain	693.313
DRR006524	Root Summer glycyrrhizin low producing strain	689.855
DRR006525	Leaf Summer glycyrrhizin high producing strain	123.840
DRR006526	Leaf Summer glycyrrhizin high producing strain	123.639

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	574.823
SRR2868004	Drought Stress (root)	650.910
SRR2967015	Control (root)	612.709

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	90.729
SRR9715740	Leaf	131.454
SRR9715741	Leaf	135.930
SRR9715739	Root	43.177
SRR9715742	Root	209.014
SRR9715743	Root	171.255

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	434.962
SRR8749028	MeJA induced 9h	616.861
SRR8749029	MeJA induced 9h	979.463
SRR8749030	Uninduced	1734.999
SRR8749031	Uninduced	1515.517
SRR8749032	Uninduced	2367.844

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	205.351
SRR8400027	Control - Root	246.099