Gene detail information of Glyur002105s00042668 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G48350.1 | 3.00E-20 | Ribosomal L18p/L5e family protein |
| NR | XP_003595391.1 | 1.82E-24 | 50S ribosomal protein L18 [Medicago truncatula] |
| COG | YP_004980566.1 | 6.00E-18 | 50S ribosomal protein L18 [Geobacillus thermoleovorans CCB_US3_UF5] |
| Swissprot | tr|Q9SX68|RK18_ARATH | 4.00E-24 | 50S ribosomal protein L18, chloroplastic (Precursor) |
| trEMBL | tr|A2Q3Y9|A2Q3Y9_MEDTR | 7.00E-25 | Uncharacterized protein {ECO:0000313|EMBL:AFK47933.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02105 | 40215 | 48056 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002105s00042668.1 | PF00861.17 | Ribosomal_L18p | 147 | 195 | 8.00E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.199 |
| SRR1783600 | control | 6.952 |
| SRR1783602 | moderate drought stress | 4.955 |
| SRR1811619 | moderate drought stress | 3.848 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.976 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.464 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.794 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.122 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.502 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.815 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 26.517 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 27.509 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.950 |
| SRR2868004 | Drought Stress (root) | 2.242 |
| SRR2967015 | Control (root) | 2.136 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.042 |
| SRR9715740 | Leaf | 6.706 |
| SRR9715741 | Leaf | 3.984 |
| SRR9715739 | Root | 1.391 |
| SRR9715742 | Root | 1.003 |
| SRR9715743 | Root | 0.847 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.998 |
| SRR8749028 | MeJA induced 9h | 1.458 |
| SRR8749029 | MeJA induced 9h | 3.735 |
| SRR8749030 | Uninduced | 1.205 |
| SRR8749031 | Uninduced | 1.179 |
| SRR8749032 | Uninduced | 1.791 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.076 |
| SRR8400027 | Control - Root | 4.385 |