Gene detail

Gene detail information of Glyur002103s00033476.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G10520.1	0	DNA polymerase lambda (POLL)
NR	XP_004516776.1	0	PREDICTED: DNA polymerase lambda-like isoform X1 [Cicer arietinum]
COG	NP_275693.1	2.00E-17	DNA-dependent DNA polymerase X protein [Methanothermobacter thermautotrophicus str. Delta H]
trEMBL	tr\|A0A072TY09\|A0A072TY09_MEDTR	0	DNA polymerase lambda-like protein {ECO:0000313\|EMBL:KEH22317.1}

Sequence

Transcript Sequence

>Glyur002103s00033476.1
ATGGCACCAAAGGCAAAAGCCACGAAGGAAAAATCTGATCCTCATGGAATGTTTGCTGGAATGGTTGTCTTCTTCGTCCCCAAAGGAGTTCAAGCTCGTCGATTACAGATTTGGAAGCAGAGGTTGGTTCAAATGGGGGCTGTCATAGAGGAGCGCCTCTCCAAACGGGTTACTCACGTTTTCGCTATGGACTCACATGCCCTTCTCCAGGAATTGGATTGGCGCCGCTTGTCACGGATAGAAGCACCTGATAAGCCTGTGGATCCTGAGCCAACTAATGCGAGCATTTCTAGTGATCCTCAGCAATTACAGAATAAGAAGATCAAATTGTCTTCCGAGGATACGAAAATTGTAAATCTTGAAAAAAGCAATGAAGATAGAAGAGAAAATGCACCACTTTCATCAACAAGCACGGCAAGCAGTCCTGGTGAAGTTGACAGTTTAAATTGTGCAAACAGNGGACCAGAACACCTTGATGCTGAAAATGAGGCGTCATCCTTGCCGTATTGCCCACCCGATCTAAACAAGAACATAACGGAGATATTTGGGAAACTTGTGGACATATATAGAGCATTGGGTGATGACCGGAGGTCCTTTAGCTATCACAAGGCTATTGCAGTGATTGAGAAGTTGCCGTTTAAAATTGAAAGTGCTGACCAGATAAAAAACCTCCCGTCAATTGGAAAATCAATGAAAGATCATATTCAGGAGATAATAACTACTGGGAAGCTATCCAAGTTGGAACACTTTGAAACTGATGAAAAGGTGAAAACAATATCCTTATTTGGAGAAGTATGGGGTATAGGTCCAGCCACAGCACTGAAATTGTATGAGAAAGGACATTGTACATTAGATGATCTTAGGAATGAAGATTCACTTACAAATGCACAGAAGTTAGGGTTGAAATACTTTGATGATATCAGGCAACGGATTCCACGCGAAGAGGTTCGAGAGATGGAACACATTTTGCAGAAAGTTGGGGAGGATATTTTGCCTGGGGTTGTTATTATTTGTGGGGGATCATATAGACGTGGGAAAGCTACCTGTGGGGACATTGATATCATTATAACACATCCCGATGGAAAAAGTCACAAAGGATTTTTGCCCAAGTTTGTAAAGCGTTTAAAGGATATGAATTTCCTGAGGGAGGATTTAATTTTCAGTACTCATAGTGAAGAGGGTACTGATTCTGGTGTTGACACTTACTTTGGTTTTTGCACCTATCCTGGACGGGAGTTGCGGCATCGTATTGATNTAAAGGTGTACCCAAGAGATATATATGCTTTTGGACTTATAGCTTGGACCGGAAATGATGTTTTAAATAGGAGGTTGAGACTGCAAGCAGAATCTAAAGGATTCCGGCTTGATGATACAGGGTTGTTTCCAGCTACTCAGGGTTCTGGCGGCAAACGGGGCACAAAAGGAAGTGCATGTTTGAAATTTGATACAGAGAAGGAGATGTTTGATTTCCTGGGCTTTCCTTGGCTTGAACCACATGAAAGAAATCTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02103	11334	18000	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K03512	POLL	EC:2.7.7.7 4.2.99.-	Base excision repair	map03410
			Non-homologous end-joining	map03450

Gene Ontology

biological_process
GO:0006281 DNA repair

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0003887 DNA-directed DNA polymerase activity

GO:0016779 nucleotidyltransferase activity

GO:0034061 DNA polymerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002103s00033476.1	PF14716.1	HHH_8	175	239	5.80E-15
Glyur002103s00033476.1	PF10391.4	DNA_pol_lambd_f	259	309	6.00E-18
Glyur002103s00033476.1	PF14792.1	DNA_pol_B_palm	310	424	4.70E-30
Glyur002103s00033476.1	PF14791.1	DNA_pol_B_thumb	430	502	5.90E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.415
SRR1783600	control	3.336
SRR1783602	moderate drought stress	3.142
SRR1811619	moderate drought stress	3.523

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.547
DRR006520	Root Summer glycyrrhizin high producing strain	7.012
DRR006521	Root Winter glycyrrhizin high producing strain	2.152
DRR006522	Root Winter glycyrrhizin high producing strain	2.160
DRR006523	Root Summer glycyrrhizin low producing strain	4.487
DRR006524	Root Summer glycyrrhizin low producing strain	4.421
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.378
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.106

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.513
SRR2868004	Drought Stress (root)	8.697
SRR2967015	Control (root)	7.534

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.220
SRR9715740	Leaf	0.841
SRR9715741	Leaf	0.918
SRR9715739	Root	0.809
SRR9715742	Root	2.094
SRR9715743	Root	3.037

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.305
SRR8749028	MeJA induced 9h	4.281
SRR8749029	MeJA induced 9h	6.103
SRR8749030	Uninduced	2.927
SRR8749031	Uninduced	3.104
SRR8749032	Uninduced	1.972

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.276
SRR8400027	Control - Root	13.058