Gene detail information of Glyur002102s00041900 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G70210.1 | 2.00E-93 | CYCLIN D1;1 |
| NR | XP_003519458.1 | 5.02E-179 | PREDICTED: cyclin-D1-1-like [Glycine max] |
| Swissprot | tr|P42751|CCD11_ARATH | 2.00E-129 | Cyclin-D1-1 |
| trEMBL | tr|I1JBY4|I1JBY4_SOYBN | 2.00E-179 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G03490.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02102 | 24864 | 29218 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002102s00041900.1 | PF00134.18 | Cyclin_N | 55 | 183 | 6.40E-30 |
| Glyur002102s00041900.1 | PF02984.14 | Cyclin_C | 186 | 286 | 1.30E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 55.851 |
| SRR1783600 | control | 55.705 |
| SRR1783602 | moderate drought stress | 65.364 |
| SRR1811619 | moderate drought stress | 65.432 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 75.766 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 74.227 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.832 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.787 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 47.810 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 48.605 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.053 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.763 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 29.915 |
| SRR2868004 | Drought Stress (root) | 36.784 |
| SRR2967015 | Control (root) | 34.797 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 22.985 |
| SRR9715740 | Leaf | 17.225 |
| SRR9715741 | Leaf | 20.491 |
| SRR9715739 | Root | 27.156 |
| SRR9715742 | Root | 89.405 |
| SRR9715743 | Root | 75.941 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.046 |
| SRR8749028 | MeJA induced 9h | 7.284 |
| SRR8749029 | MeJA induced 9h | 3.292 |
| SRR8749030 | Uninduced | 9.651 |
| SRR8749031 | Uninduced | 4.098 |
| SRR8749032 | Uninduced | 1.598 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 115.536 |
| SRR8400027 | Control - Root | 114.076 |