Gene detail information of Glyur002099s00030885 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G33700.1 | 3.00E-160 | Protein phosphatase 2C family protein |
| NR | KHN33785.1 | 0 | Hypothetical protein glysoja_013791 [Glycine soja] |
| COG | YP_003709340.1 | 9.00E-20 | serine/threonine PP2C protein phosphatase [Waddlia chondrophila WSU 86-1044] |
| Swissprot | tr|P93006|P2C27_ARATH | 0 | Probable protein phosphatase 2C 27 |
| trEMBL | tr|I1K7B1|I1K7B1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G01870.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02099 | 43476 | 46389 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002099s00030885.1 | PF00481.16 | PP2C | 92 | 343 | 3.20E-74 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 22.428 |
| SRR1783600 | control | 22.155 |
| SRR1783602 | moderate drought stress | 20.016 |
| SRR1811619 | moderate drought stress | 19.979 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 32.843 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 32.480 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 42.727 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 42.400 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 30.683 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 29.719 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.438 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 55.487 |
| SRR2868004 | Drought Stress (root) | 78.018 |
| SRR2967015 | Control (root) | 78.920 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 49.301 |
| SRR9715740 | Leaf | 46.374 |
| SRR9715741 | Leaf | 52.521 |
| SRR9715739 | Root | 23.072 |
| SRR9715742 | Root | 36.987 |
| SRR9715743 | Root | 35.992 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 71.303 |
| SRR8749028 | MeJA induced 9h | 91.412 |
| SRR8749029 | MeJA induced 9h | 105.826 |
| SRR8749030 | Uninduced | 87.839 |
| SRR8749031 | Uninduced | 101.453 |
| SRR8749032 | Uninduced | 127.783 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 64.009 |
| SRR8400027 | Control - Root | 63.052 |