Gene detail information of Glyur002099s00030884 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G42480.1 | 3.00E-42 | |
| NR | XP_003527301.1 | 2.77E-108 | PREDICTED: protein canopy homolog 1-like [Glycine max] |
| trEMBL | tr|I1K7B2|I1K7B2_SOYBN | 1.00E-108 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G01880.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02099 | 39599 | 43161 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002099s00030884.1 | PF11938.3 | DUF3456 | 34 | 176 | 2.10E-45 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.438 |
| SRR1783600 | control | 8.124 |
| SRR1783602 | moderate drought stress | 3.234 |
| SRR1811619 | moderate drought stress | 3.151 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.753 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.153 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.656 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.802 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.954 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.150 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.753 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.827 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.164 |
| SRR2868004 | Drought Stress (root) | 9.943 |
| SRR2967015 | Control (root) | 9.300 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.150 |
| SRR9715740 | Leaf | 3.820 |
| SRR9715741 | Leaf | 2.347 |
| SRR9715739 | Root | 0.928 |
| SRR9715742 | Root | 1.468 |
| SRR9715743 | Root | 1.909 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.633 |
| SRR8749028 | MeJA induced 9h | 10.192 |
| SRR8749029 | MeJA induced 9h | 10.305 |
| SRR8749030 | Uninduced | 3.143 |
| SRR8749031 | Uninduced | 2.154 |
| SRR8749032 | Uninduced | 1.333 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.876 |
| SRR8400027 | Control - Root | 14.333 |