Gene detail

Gene detail information of Glyur002099s00030879.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G35550.1	4.00E-59	WUSCHEL related homeobox 13
NR	XP_007136031.1	2.08E-129	hypothetical protein PHAVU_009G012200g [Phaseolus vulgaris]
Swissprot	tr\|Q5QMM3\|WOX8_ORYSJ	1.00E-73	WUSCHEL-related homeobox 8
trEMBL	tr\|V7ART8\|V7ART8_PHAVU	8.00E-130	Uncharacterized protein {ECO:0000313\|EMBL:ESW08025.1}

Sequence

Transcript Sequence

>Glyur002099s00030879.1
GGCCAAATTGCGCAGCAAACTACGGTTATTTCGGCTTTGACTTAGGAGACTCTGCAAAATGCATGCAAATGCAATTATTCCCCTGTCAAAGCTAAATCCAAATCCAAATCCAAATCCATATCCAAAACTGAGTGAGAGTCATTGGTTTCTGAAACTGCAAAAAAAAGGGAAAAAGAAAAGAAAAGAAATGGAGGCAGAACATCAACATGAGACCCCAAATGGAATTGGAGGGCTGTATGTGAAAGTGATGACCGACGAACAAATGGAACTGCTGAGGCAACAGATTTCTGTCTACACCACCATTTGTGAACAGCTCGTTGAGATGCACAAAGCCGTTACCACTCAACAGGACCTCGCTGGATTGAGGCTGGGTAATTTGTACTGTGATCCACTGATGGCATGTTCTGCACACAAGATAACTGCGAGACAGCGCTGGACTCCAACGCCACTGCAGCTTCAAATACTGGAGCGTATTTTTGATGAGGGCACTGGCACTCCGAGCAAACACAAGATCAAAGAGATAACCATTGAACTGGGCCAACATGGCCAGATATCGGAGACCAATGTTTATAATTGGTTCCAGAACAGAAGAGCTCGTTCAAAGCGGAAGCAACTGGCTCCCACCACAAGTCATGTAGATGTAGAGCCTGAGGCAGAGACTGAAGTCGAGTCTCCAAAAGAGAAGAAGACACGTGANGAAAGCCTTCAAGTTCAATTCCCCTATGAGAATTTATCACCTCATAGGGCCAAGGACATGTACATCCAGAGTCCTGACATAGGACTTGACCAGTTTTTGGGTAAACTAGAAGTTGCAGGCTGCTATAGTTCTTATTTTCTTTGAGGATTTAAAGACCGGATTCTCCAACTGCGTTGCCTTATTGCAGCTTGGTTGACTNAACATTGTTGATGATATTGTTATACATAGGAGCTTTCATCCAAAAGTGTTGATGAACCACAAAAAGAAGTGGCATATATATTATGTTCACATGCGTATTGTATAAATTATTTTTTCTTAGGTGCTTTGCAGAGCTAACTGTTGATCAGCCATTACTGTGATTTGTTACTACTTTACAAGTTTTGAACCTGATTGCTCCTTCCACTTAGCATTAGATTTGACTGATTGGAGATAACATTCTTGTCAATCATGCATGTATGTTACCATGGAGTATAATATCATCATCAGGCTTCAGGCTTCAATCTTCATTAACATCTTGTGAGTTATGTTCAGACAAAGTAAATCTGCTGAAGCATTTTCTTCTTTCCATATTGGTTGTCTCAGCAGGTGAAGACTCCCTTCAATGATTAGACTTTAGGGTAACAATTTTTAGCCCGTAAGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02099	6947	9378	+

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002099s00030879.1	PF00046.24	Homeobox	123	183	1.60E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.486
SRR1783600	control	19.641
SRR1783602	moderate drought stress	7.395
SRR1811619	moderate drought stress	7.290

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.571
DRR006520	Root Summer glycyrrhizin high producing strain	21.648
DRR006521	Root Winter glycyrrhizin high producing strain	17.210
DRR006522	Root Winter glycyrrhizin high producing strain	17.544
DRR006523	Root Summer glycyrrhizin low producing strain	19.879
DRR006524	Root Summer glycyrrhizin low producing strain	19.320
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.339
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.461

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.502
SRR2868004	Drought Stress (root)	18.737
SRR2967015	Control (root)	18.882

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.253
SRR9715740	Leaf	2.948
SRR9715741	Leaf	3.769
SRR9715739	Root	3.092
SRR9715742	Root	4.666
SRR9715743	Root	5.523

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	71.953
SRR8749028	MeJA induced 9h	33.289
SRR8749029	MeJA induced 9h	64.156
SRR8749030	Uninduced	16.069
SRR8749031	Uninduced	15.200
SRR8749032	Uninduced	18.753

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.137
SRR8400027	Control - Root	32.921