Gene detail information of Glyur002098s00031931.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G35040.1 | 5.00E-180 | AICARFT/IMPCHase bienzyme family protein |
| NR | AET00779.2 | 0 | aicarft/IMPCHase bienzyme family protein [Medicago truncatula] |
| COG | YP_003759034.1 | 2.00E-102 | phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [Dehalogenimonas lykanthroporepellens BL-DC-9] |
| trEMBL | tr|G7KEF8|G7KEF8_MEDTR | 0 | Aicarft/IMPCHase bienzyme family protein {ECO:0000313|EMBL:AET00779.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02098 | 6392 | 10734 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00602 | purH | EC:2.1.2.3 3.5.4.10 | Purine metabolism | map00230 |
| One carbon pool by folate | map00670 | |||
| Antifolate resistance | map01523 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002098s00031931.1 | PF02142.17 | MGS | 1 | 32 | 1.80E-06 |
| Glyur002098s00031931.1 | PF01808.13 | AICARFT_IMPCHas | 53 | 316 | 1.50E-104 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.753 |
| SRR1783600 | control | 10.887 |
| SRR1783602 | moderate drought stress | 12.721 |
| SRR1811619 | moderate drought stress | 12.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 28.653 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 28.728 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.632 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.612 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 33.185 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 34.023 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.381 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.709 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 37.445 |
| SRR2868004 | Drought Stress (root) | 32.816 |
| SRR2967015 | Control (root) | 36.412 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 19.387 |
| SRR9715740 | Leaf | 21.145 |
| SRR9715741 | Leaf | 17.863 |
| SRR9715739 | Root | 25.414 |
| SRR9715742 | Root | 28.197 |
| SRR9715743 | Root | 33.376 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 37.493 |
| SRR8749028 | MeJA induced 9h | 22.136 |
| SRR8749029 | MeJA induced 9h | 28.547 |
| SRR8749030 | Uninduced | 14.594 |
| SRR8749031 | Uninduced | 5.244 |
| SRR8749032 | Uninduced | 15.223 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 34.763 |
| SRR8400027 | Control - Root | 33.586 |