Gene detail information of Glyur002092s00036814 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G71720.1 | 8.00E-78 | Nucleic acid-binding proteins superfamily |
| NR | XP_006599470.1 | 7.11E-142 | PREDICTED: rRNA biogenesis protein rrp5-like [Glycine max] |
| COG | YP_005518049.1 | 3.00E-16 | RNA binding S1 domain-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1] |
| Swissprot | tr|P29344|RR1_SPIOL | 5.00E-13 | 30S ribosomal protein S1, chloroplastic (Precursor) |
| trEMBL | tr|K7MHP4|K7MHP4_SOYBN | 6.00E-143 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G27770.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02092 | 3162 | 13935 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002092s00036814.1 | PF00575.18 | S1 | 311 | 374 | 1.70E-06 |
| Glyur002092s00036814.1 | PF03140.10 | DUF247 | 412 | 494 | 1.20E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.854 |
| SRR1783600 | control | 6.044 |
| SRR1783602 | moderate drought stress | 5.089 |
| SRR1811619 | moderate drought stress | 5.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.358 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.275 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.321 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.410 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.607 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.498 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.759 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.604 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.800 |
| SRR2868004 | Drought Stress (root) | 3.293 |
| SRR2967015 | Control (root) | 2.814 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.944 |
| SRR9715740 | Leaf | 5.979 |
| SRR9715741 | Leaf | 5.399 |
| SRR9715739 | Root | 0.589 |
| SRR9715742 | Root | 2.938 |
| SRR9715743 | Root | 3.286 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.324 |
| SRR8749028 | MeJA induced 9h | 2.704 |
| SRR8749029 | MeJA induced 9h | 1.409 |
| SRR8749030 | Uninduced | 1.343 |
| SRR8749031 | Uninduced | 0.355 |
| SRR8749032 | Uninduced | 0.354 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.011 |
| SRR8400027 | Control - Root | 7.926 |