Gene detail

Gene detail information of Glyur002091s00032470

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G37290.1	0	Ypt/Rab-GAP domain of gyp1p superfamily protein
NR	KEH42305.1	0	RabGAP/TBC domain protein [Medicago truncatula]
COG	YP_007081418.1	4.00E-20	glutathione S-transferase [Pleurocapsa sp. PCC 7327]
Swissprot	tr\|Q9LZ06\|GSTL3_ARATH	2.00E-97	Glutathione S-transferase L3
trEMBL	tr\|A0A072VW47\|A0A072VW47_MEDTR	0	RabGAP/TBC domain protein {ECO:0000313\|EMBL:KEH42305.1}

Sequence

Transcript Sequence

>Glyur002091s00032470.1
AAATACGAGCCATATTCTCAACGTGTAGCTTTTTACGAAGAGTTTCTTCTAGTACTTTCTTCGAGTGCCACGTGGCAGGGCAAAAGCGATCGTCATCGCTGACAACACGACATGCGGTCCAACGTCGTCTATAAAAGGCTAACTCGCATGAACACAGACAGCATCTCACTCAATACAGATAAGTGTCCAAAGCAAAAGCATTAGATTCGAGAAAGAACTAGAACACCATCAATGGCAACCATTGGCGTGCAACAAGTTCGTCCTCCCCAGCTAACTTCCACTTCCGAGCCACCTCCTCTTTTTGATGGAACCACCAGGTTGTACATCAATTATAGTTGCCCCTATGCACAACGTGGGTTACAAAACAAGATTCAATTGGTTCCCATCGACCTTCAAAACAGGCCTGCTTGGTATAAGGAAAAAGTTTACCCTGAAAATAAGGTGCCATCATTGGAGCACAATGGCAAGGTAATTGGAGAAAGTCTTGACTTGATCAAATATTTAGATGCCAACTTCGGAGGGACACCTCTGTTTCCAAGTGATCCTGCCAAGAAAGAGTTCGGTGAGCATTTGTTATCCCATGGTGATACATTNAACAAAGAACTCTTCTCTTCATTGAAAGGGGATGCTGTGCAACAAGCCAGTCCTGCTTTTGAGTTCTTGGAGAATGCTCTTGGTAAATTTGATGATGGGCCATTCTTGCTTGGTCAATTCAGTCTGGTGGATATTGCCTATATTCCATTTGTTGAAAGGTTCCAAATTGTATTTGCTGAGGTGTTCAAGCATGACATCACAGAAGGAAGGCCTAAACTTGAAGCATGGATTGAGGAGTTGAACAAGATTGATGCTTATACAGAGACAAGAGTTGATCCTCAGGAAATAGTTGATCTTTTCAAGAAGCGTTTTCTGCAGCATGCGACGTGGATTCACAACGTCAGAGAAAATAGGAAGATTCAGATTCAGTNACCATTTTCATTTGATCCTCCCTCCGAAACTAACTCCCCAAACCCTAATCCCTTCTCTCCCCTTCTCTTCGGATTCATATTCGCGCCATCGCTACCGAACATGACGCACTTCAGTTTCAATCTCCTCCACAATTTCGAACCCAAGAGGGATTCTTATGGATTTGCATTAAGGCCTCAATACGCACAAAGATACAGAGAGTATTCTGTAATCTACAAGGAAGAGGAAGATGAAAGATCAGATAAATGGAGAAGTTTCCTTGAACAGGTACCCAAATCATTTCAAGCAAGTTCTTCTGAAGATAAACATAAAGAAACATTGAAGGCTCAAACTAATGAGGTAAGAGAAGAGGGAAATACTTTTAGGGTAAGTAATGGGGATGATTCAAGTATCAGGAAATTTTCTGAAGGTGCGGAGGTAGAAGAGACTAATGCAGTCAGAATTAGCAAAGGAGAGGATTCAAGTGGCAGGAAGTCTGCTGAAGGCAATGTGCTAATAGAAGGGACAATTCTAAATAGGGTTAACGAAGGAGGTGAGTCAAGTGACAGGACATCTTCTGGAGATACTGAGATAAGAGAAGATACTGGTCTGGGGAGGGCTAGTGAAGGGGATGATTCAAGTAGCAGGAAGTCTGTTTCTGATAGTTCATCAGTAAATAATTCTGGAAAGGAACTGCACCATTCAGAAGAAAGAAAGACACGTAAGGTTCAATGCTGGGCTGAAATCAGACCATCTCTTACTGCCATTGAAAAAATATTGAGTTCTCGTGTCAAGAAGGGAAAGAATATGAAAGGTGAGAAAATAAATGGTAATATTGATCATCATCTTCCATCTATAGAAGAAGCGGAACCTGTGGAAGGAGTTCATGAAGAGGATATTCAGGAAGAAGTCTGCACTAATGAGACACTAGATGGTGGTACCAATGGCTCAAGGGTAGAAAATGCTTTAATGGATCAAGAGTTGCCAGAACTCTTCACCCCATGGAAGGAACTGGAGACACTTGTTCATGGAGGAGTCCCGAAGGATCTTAGAGGAGAGGTCTGGCAAGCCTTTGTTGGTGTGAAAACACGGCGCGTGGAGAGCTATTATGACGATCTGTTAGCTCAAGAAACTAACAGTTGTGAAAGCAAGGAGCAAGATGTTTCAGCTGGTGCATTAGGAAAATGGAGAAAGCAGATTGAGAAGGACATACCGCGAACTTTCCCAGGTCACCCTGCTTTGGACGAAAATGGCAGAAATTCCTTGAGACGTTTACTGCTAGCATATGCTCGACATAACCCCTCTGTTGGGTACTGTCAGGCAATGAACTTCTTTGCTGGTATATTGCTGTTGCTTATGCCAGAAGAAAATGCCTTTTGGGCATTCGTTGGAATTATTGATGATTATTTTGAAGGCTATTATACAGAGGAAATGATAGAATCTCAGGTGGACCAGCTTGTTTTTGAGGAATTGATGCGTGAAAGATTTCCTAAACTTGTTAATCATCTGGATTACTTGGGAGTGCAGGTGGCATGGATATCTGGACCTTGGTTTCTATCAATCTTTGTGAACATGATTCCATGGGAAAGTGTTCTTCGAGTTTGGGACGTGATACTATTTGAAGGGAACCGTGTTATGCTATTTCGGACAGCACTGGCTCTAATGGAATTATATGGGCCTGCATTAGTTACAACACAAGATGCAGGTGATGCAATTACTCTATTGCAATCACTCGCTGGCTCGACATTTGATAGCAGCCAGCTTGTCTTTACTGCTTGTATGGGTTATCTAGCTGTGACTGAGGCAAGATTGCAGGAACTGAGAGAAAAACACCGACCATCTGTATTAGTTGTTATAGAAGAAAGGTCACAGAAAGGACGAGTTTGGAAAGATTCCAAAGGGCTTGCATCTAAATTATATAGTTTCAAAAAAGACCAAGGGTCATTGGTAGAGGAAATGAAAAATACTGAAGGAGGTGATATGGTAGCTGATAAGGATGTGAAGTTGGAGTCCCATTCCTCTGATTTAGATGAATTGCTTAGTAGCCTCAATGTTAATTCAGAAGTGGATTCCCTACCAGATCTCCAGGAACAGGTGGTTTGGTTGAAGGTTGAGTTATGTAGATTGCTGGAGGAGAAAAGATCTGCCATACTCAGAGCTGAGGAACTAGAAACAGCTTTCATGGAGATGGTGAAGGAAGATAACCGTCTGCAGTTGAGTGCAAGGGTTGAGCAATTGGAGCAGGAGGTAGCTGAGTTACAACAAGCCCTTTCTGATAAGAAAGAACAAGAAGCTTCCATGCTGCAGGTTCTAAGTGCACCTGTTTTCTCCAGTGTCCTAATGCGGCTAGAACAGGACCAAAAACTTACTGAAGAAGCTCGCAGAAGAGCAGAGCAAGACCTTGCAGCTCAGAAATATGAAGTTCACGTGCTCCAGGAAAAATATGAGAAGGCTATGGCATCCGTTGCTGAGATGCAAAAGCGAGTTGTCATGGCGGAAAGCATGTTGGAGGCTACCCTTCAATATGAATCTGGCCAAACCAAAGCACTTTCTTCTCCAAGGGCTGGTCGTGGACAAAGCCCAAGGTTAGAAAACTCCTCACGGAAGATTGGTCTACTAAGTTTTGGACTTGGCTGGCGTGACAGAACCAAGGGCAAACCAAACGCTGAGGAATCTAGCGAAAGTGTGCATAACAATGGCACTCCGAGAAAAGAATCCAATAACCAAGAACAAGAAAATTAGATAGAACATGCAAATCAGTGCCAGTCTGACCCGAGACCCGGTATCTCCTGCCAACATAGGAGCTGTTACCTGTTTCTGATTATCACTGCTAAATTTTCTGTTTATCATATAGTTGGCCGAAAGTTAGGGGAAGAATCCATTTGTATCATCATCATCAAAAGCCAAATTGATGGATTAGTTTTTCCTCCCACTTTCTTCATTACCCATTCTAAATCAAAATCCGATGTAAGGAATTGTTTGATATGTTGATAGATCAAAAAATATAGTCTGACACCATCGTTGGCAACATGGCATCATTTACTGAAGCGAACAACCAGCCGTGTCCTTACCATTATATAATGTGTGCACTTGTGCACACATGTAAAGTTTCCAATTATTCTGTTTTTTTTTTTGGGTAAATAGAGTAGGGAAAAAGTAGCCAGCATTTTATGAAACTCTGGTGCTAGCAGTTTCTGCTACGTAAGAGATGTTCTGCTGCTGCTGTTTTGTATCCATCTTTGTTACACGTCTGCACATTGGTTTAGCACGTGTTTAGATACACGGTTTCGAGCTCTTTGATGTGCGGCAAGCTAAAAGCTACTCTCAGTAGCTTCTCTCTTAACTCACAGTGGCGGCAAGGAAAACTTGCAGCCAAACATGTGCTTGTTGGACTAAATTATGTACTTACTGAGAAGAAATCTAATCATGGCTCTTCTCTCCA

Protein Sequence

>Glyur002091s00032470.1
MATIGVQQVRPPQLTSTSEPPPLFDGTTRLYINYSCPYAQRGLQNKIQLVPIDLQNRPAWYKEKVYPENKVPSLEHNGKVIGESLDLIKYLDANFGGTPLFPSDPAKKEFGEHLLSHGDTXNKELFSSLKGDAVQQASPAFEFLENALGKFDDGPFLLGQFSLVDIAYIPFVERFQIVFAEVFKHDITEGRPKLEAWIEELNKIDAYTETRVDPQEIVDLFKKRFLQHATWIHNVRENRKIQIQXPFSFDPPSETNSPNPNPFSPLLFGFIFAPSLPNMTHFSFNLLHNFEPKRDSYGFALRPQYAQRYREYSVIYKEEEDERSDKWRSFLEQVPKSFQASSSEDKHKETLKAQTNEVREEGNTFRVSNGDDSSIRKFSEGAEVEETNAVRISKGEDSSGRKSAEGNVLIEGTILNRVNEGGESSDRTSSGDTEIREDTGLGRASEGDDSSSRKSVSDSSSVNNSGKELHHSEERKTRKVQCWAEIRPSLTAIEKILSSRVKKGKNMKGEKINGNIDHHLPSIEEAEPVEGVHEEDIQEEVCTNETLDGGTNGSRVENALMDQELPELFTPWKELETLVHGGVPKDLRGEVWQAFVGVKTRRVESYYDDLLAQETNSCESKEQDVSAGALGKWRKQIEKDIPRTFPGHPALDENGRNSLRRLLLAYARHNPSVGYCQAMNFFAGILLLLMPEENAFWAFVGIIDDYFEGYYTEEMIESQVDQLVFEELMRERFPKLVNHLDYLGVQVAWISGPWFLSIFVNMIPWESVLRVWDVILFEGNRVMLFRTALALMELYGPALVTTQDAGDAITLLQSLAGSTFDSSQLVFTACMGYLAVTEARLQELREKHRPSVLVVIEERSQKGRVWKDSKGLASKLYSFKKDQGSLVEEMKNTEGGDMVADKDVKLESHSSDLDELLSSLNVNSEVDSLPDLQEQVVWLKVELCRLLEEKRSAILRAEELETAFMEMVKEDNRLQLSARVEQLEQEVAELQQALSDKKEQEASMLQVLSAPVFSSVLMRLEQDQKLTEEARRRAEQDLAAQKYEVHVLQEKYEKAMASVAEMQKRVVMAESMLEATLQYESGQTKALSSPRAGRGQSPRLENSSRKIGLLSFGLGWRDRTKGKPNAEESSESVHNNGTPRKESNNQEQEN

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02091	26904	48115	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002091s00032470.1	PF13417.1	GST_N_3	46	98	4.60E-10
Glyur002091s00032470.1	PF13410.1	GST_C_2	133	199	1.20E-11
Glyur002091s00032470.1	PF00566.13	RabGAP-TBC	586	795	1.10E-55
Glyur002091s00032470.2	PF13417.1	GST_N_3	46	98	4.60E-10
Glyur002091s00032470.2	PF13410.1	GST_C_2	133	199	1.20E-11
Glyur002091s00032470.2	PF00566.13	RabGAP-TBC	586	795	1.10E-55

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.945
SRR1783600	control	1.790
SRR1783602	moderate drought stress	2.604
SRR1811619	moderate drought stress	2.522

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.788
DRR006520	Root Summer glycyrrhizin high producing strain	3.925
DRR006521	Root Winter glycyrrhizin high producing strain	70.148
DRR006522	Root Winter glycyrrhizin high producing strain	69.797
DRR006523	Root Summer glycyrrhizin low producing strain	2.858
DRR006524	Root Summer glycyrrhizin low producing strain	2.844
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.664
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.589

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.918
SRR2868004	Drought Stress (root)	10.729
SRR2967015	Control (root)	7.256

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.491
SRR9715740	Leaf	28.376
SRR9715741	Leaf	19.970
SRR9715739	Root	0.306
SRR9715742	Root	2.962
SRR9715743	Root	2.969

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.622
SRR8749028	MeJA induced 9h	27.425
SRR8749029	MeJA induced 9h	13.996
SRR8749030	Uninduced	118.844
SRR8749031	Uninduced	66.976
SRR8749032	Uninduced	86.328

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.195
SRR8400027	Control - Root	8.284