Gene detail

Gene detail information of Glyur002091s00032469

Functional Annotation

Database	Orthologs	E value	Annotation
NR	XP_004505607.1	2.04E-88	PREDICTED: uncharacterized protein LOC101490832 isoform X2 [Cicer arietinum]
trEMBL	tr\|V7D0K6\|V7D0K6_PHAVU	2.00E-69	Uncharacterized protein {ECO:0000313\|EMBL:ESW35909.1}

Sequence

Transcript Sequence

>Glyur002091s00032469.1
CTCTTCTATCTCACTCTGCGAAACCCTTGCGAACCCACGGCAGCGAGGCAACGGCGGCAAGGTGACGGCCGCGAGGCGATCGATACGGCGAGGCGGTGGTTCGTTCTTGATCTGTGAAAGTACTGTTCGTGGCAATCGGAGATTACAGTTGAAGCTTAGTGTTGGAGTTCATTGATTATGTCAGGACGAGGTCAACCCGATATGGCGAAGCTCTCGACTACTCGGGGTCGGGGTAGGATGATATGTCCTAGCACACTGGCACAGGATGGTGAGCGCAAGCGTTGCCAGAGACAAACCCCGACTCAGTCCACACCACCCCCACCTCCACCTGTAGTTCAAAAGGACGACCGTGGGAGAGTCATCATCCGACCTTATGGACGAGGCTCGGTTGCAGCCGATGCACTCAGGTATGCCATTGAGAAACAGTTTCGGGATCCTCACCTCTGCTGGAGTGAGGTGCCTACAGGTGTGAAGGATGACTGGTGGAAATGGTTTCAGGATAAAGTGGCTTGGGATCCTCATGATCATGAGGCTATCTTTAGGGTATTTAATCAGAGAGGTGCAAAACGTCTTTTTGATATTCTCTCAAAGGCGAGGAAGAAGGGCAAAAAGCCCAAGTGGATGGGGGATAACGCATGGGTTGGTCTTCAGGACAAATGGAATGATAAAGTCTATCAGGCTCTCTCGGTTCAAAATAAGACCAATCGAGCTTCAAATAAAGGCGGAGCAGTCCACACCATAGGGCGCAGATCCCATCTTGATGTGGCCCTAGATATGGCCGAAAAGCTTGGGCAATCAGTGGATCCAGGAGAGCTCTTCTTGTTCATCCACAAGACGAAATCTGGGGAATGGGTCGATAGCTGCTCTGAAAGGACTTATGTACATTCTCTCGAAGCATATCAGGAACGTTTGAGGCAGGAATCGATGCAAATGGATGAGGATTCGCAGGAGGTGGATGGGTCGAGGAGGCTTCAGATATGGCAGAGTGAGACTGGGGGTAGGACTCGAGGTCGAAGTTACGGTACCGCAGACATGTCTGTGAATGTTCGCCGTGGTGCCTCATCGTTGACTCAGGAGTCTCGGGCACCTACGACGACTCGCACTACCCATGACACTGAAGCGACTGCTGAAGCTCGACAGCGGGCAGAAGAAGCTGTTCAGCGGGCAGAAGAAGCTGTTCAGCGGGCAAATGAAGCCAATCAGAAGGTCGCTATGTTAGAGGAGCAGCTTCGCACTATCATGGCACTTTACGCAGCCGAGCGCCAGTCAGGCGATGCTTCATGTAGTCAGGCTCCAGCTCCTTCGCCTCCTCCTCCACCTCCTCCTCCACCTGAGCACCCTCATCATTATGATGCTGAACATGATAACCAGTCATTAGATGAGGCAGACTCGCCACCCTGTCATCGTCGTCGTAGATCATGACTACCTTGTAGTATTGACATTTTTTACTAAGTTGTCTTATTTGGATTACCTTGTAGGTATTGGTTGGCATTTCATCGTAACTTGTCTTATTTGGATTACCTTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02091	5357	20999	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002091s00032469.1	PF03004.9	Transposase_24	151	283	3.70E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.285
SRR1783600	control	0.350
SRR1783602	moderate drought stress	2.869
SRR1811619	moderate drought stress	2.327

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.355
DRR006520	Root Summer glycyrrhizin high producing strain	6.088
DRR006521	Root Winter glycyrrhizin high producing strain	11.376
DRR006522	Root Winter glycyrrhizin high producing strain	11.495
DRR006523	Root Summer glycyrrhizin low producing strain	31.367
DRR006524	Root Summer glycyrrhizin low producing strain	31.648
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.568
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.597

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.100
SRR2868004	Drought Stress (root)	3.669
SRR2967015	Control (root)	3.750

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.245
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.435
SRR9715739	Root	0.000
SRR9715742	Root	3.943
SRR9715743	Root	2.716

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.250
SRR8749028	MeJA induced 9h	3.739
SRR8749029	MeJA induced 9h	5.158
SRR8749030	Uninduced	2.390
SRR8749031	Uninduced	2.355
SRR8749032	Uninduced	3.203

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.669
SRR8400027	Control - Root	4.557