Gene detail

Gene detail information of Glyur002077s00033740

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G60020.1	2.00E-171	laccase 17
NR	XP_007140515.1	0	hypothetical protein PHAVU_008G119200g, partial [Phaseolus vulgaris]
COG	YP_005009977.1	3.00E-10	multicopper oxidase type 3 [Niastella koreensis GR20-10]
Swissprot	tr\|Q9FJD5\|LAC17_ARATH	0	Laccase-17 (Precursor)
trEMBL	tr\|V7B3V4\|V7B3V4_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW12509.1} (Fragment)

Sequence

Transcript Sequence

>Glyur002077s00033740.1
ATGGATTTGACCCACTTTCCTTCATTTCCATCAGTCAGTTTTCTTTTGTTTGGTTTCTGTGTTACAACNTTGTTTCCTGAGCTTGTAGTGAGCATAACAAGGCACTATACATTTAATATTGAGTACCTGAATGTAACAAGATTGTGCCACACAAGGAGCATTCTGAGTGTAAATGGGAAATTCCCAGGACCTCACTTAGTGGCAAGGGAAGGCATGGAATCCGTCAGAGAACAACTGGGTGGTATGATGGACCAGCATATGTCACACAGAGAATGGTTTAATGTTGACCCAGAAGCAATTATAAGTCAGGCACTGCAGACAGGAGGGGGACCCAATGTTTCAGATGCATACACCATCAATGGCCTTCCGGGGCCTTTGTACAATTGTTCCTCTAAAGATACATTCAGGCTAAAGGTGAAGCCAGGAAAGACATATCTGCTAAGGATAATCAATGCTGCGCTCAACGAAGAGCTCTTCTTCAGCATTGCAAATCACACCCTAACAGTTGTGGAAGCTGATGCTAGATACACCAAACCATTTGACACAGACACACTCCTCATAGCCCCAGGACAAACCACAAACGTTCTTCTCAAAACCAAGCCACACTTCCCCAATGCCACTTTCCTCATGTCTGCAAGACCCTATTTCACAGGCCGTGGCACCTTTGACAACTCCACCTCAACAGGTTTCCTCCAATATTACAAGCACCACCACTCTGCAGCACTCAAAAAGCTTCCCCTTCTCAAACCAACAACACTTCCACCAATAAATGCCACAAACTTTGTGGCAAACTTCACAGGAAAACTCAGAAGCCTAGCCAATGCTAAGTTCCCTGTGAATGTACCACAGAAAGTTGACAAGAGGTTTTTCTTCACTGTGGGACTTGGGACTAGTCCTTGCCCTATGAACACAACATGTCAAGGACCAAGTAACAACACCAAATTCTCAGCCTCAGTGAACAACATTTCTTTTGTGCTTCCATCATCTGTATACAAGACTGGTTTCCCTGCTTCCCCTTTGATCCCTTTCAATTACACAGGGACACCACCAAACAACACAATGGTTAGCAATGACACAAAGTTGGTTGTGCTGAAGTTCAATACCAGTGTGGAGTTGGTGTTGCAAGATACTAGTATTCTTGGTGCTGAGAGCCACCCTTTGCATCTTCATGGCTATGACTTCTTTGTTGTTGGACAAGGTTTTGGAAACTATGACCCCAACAAAGACCCTGCAAATTTTAATCTGGTTGACCCTGTTGAGAGGAACACGGTTGGTGTTCCTGCTGGTGGTTGGGTTGCCATTCGCTTTTATGCAGATAACCCAGGGGTGTGGTTCATGCACTGTCACCTTGACATCCACACAAGCTGGGGATTGAGAATGGCATGGCTTGTATTAGACGGACCTGAGCCCAACCAGAAGCTTCAACCACCACCTTCTGATCTTCCAAAATGTTGACTTTGAGTTTGACTGAGAGACCCTTTTGTGTCCACATTCAATTGGCCCCTGTGCTTTCATTAATTAATTTCCTGAGTCACATTCTCCAATTAATGTTTTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02077	12616	17651	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0046274 lignin catabolic process

GO:0055114 oxidation-reduction process

cellular_component
GO:0048046 apoplast

molecular_function

GO:0005507 copper ion binding

GO:0016491 oxidoreductase activity

GO:0052716 hydroquinone:oxygen oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002077s00033740.1	PF00394.17	Cu-oxidase	90	235	8.70E-41
Glyur002077s00033740.1	PF07731.9	Cu-oxidase_2	348	465	5.60E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.019
SRR1783600	control	0.023
SRR1783602	moderate drought stress	0.046
SRR1811619	moderate drought stress	0.024

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.371
DRR006520	Root Summer glycyrrhizin high producing strain	0.260
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.283
DRR006524	Root Summer glycyrrhizin low producing strain	0.355
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.931
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.804

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.503
SRR2868004	Drought Stress (root)	0.824
SRR2967015	Control (root)	0.376

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.825
SRR9715740	Leaf	0.233
SRR9715741	Leaf	0.142
SRR9715739	Root	0.195
SRR9715742	Root	0.827
SRR9715743	Root	0.731

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.123
SRR8400027	Control - Root	0.246