Gene detail

Gene detail information of Glyur002073s00041765

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G29950.1	Ypt/Rab-GAP domain of gyp1p superfamily protein
NR	XP_003595064.1	TBC1 domain family member-like protein [Medicago truncatula]
trEMBL	tr\|G7IG77\|G7IG77_MEDTR	Ypt/Rab-GAP domain of gyp1p superfamily protein {ECO:0000313\|EMBL:AES65315.1}

Sequence

Transcript Sequence

>Glyur002073s00041765.1
CACCACCATTACACTACCACCTCCTTTTTCAGTTTTTTTCTCCATCTTCTTCTTCTCTTACCTTTTTCTGTACACAAACAAACTTGTTATTCTCTCTCTCTCTCTCTGTCTCTCCAAAGCAATACATAGAGAAAATTAAGAGCATGAAGATAAGAAAAACATTCAACTGTGCAAATCATTGAATTTCTCTGCAGAAAAATTAAGTACCCCAATTCTTTTTTCCCCCTATAAACTCTCCTCCTTCTTGACCCTTCAACCTCAATTTGGTGAGCTTCTTCTAGAAAGAAGAAAAACCAAGTAAAGTAGGGTTTTTTCTTCATTTAACTCCACAGTTTTAGGCAAATTTTGTTGGTTACTTTTTTTTTCTTTTTCTGGAAAGTTTGCGTTTTTCTGGATTTTCGTTGCGTTTGAGTTTCTGGGTTGGTGAGGAATTTCTACAAGGTCATGCCGCAGGCTCCGGTGGATCCGTTATCGCCGCAACCTTCGAGCTCCGACGCCGTTTCTCGGAGATCGGCACCGGAGAATCGGAGATTCGGTGACCTTAGAGGATTGCAGTGGCGTATAAATCTTGGGGTGTTGCCATCTTCCTCTTCAACTTCCATTGATGATATTCGTCGGGTCACTGCTGATTGTAGGAGGAGGTATGCCAGTTTGAGGAGGCGCCTCCTTGTTGAACCACATGTTCCAAAGGNTGGAACTAATTCACCCAATCTTGTCATGGACAATCCACTTTCACAAAATCCAGATAGTACATGGAGTCGCTTTTTTCGCAATGCAGAGCTGGAGAGAATGGTTGATCAGGATTTATCACGNTTATACCCAGAACATGGCAATTATTTCCAAACACCAGGATGCCAAGGCATGTTGAGACGAATTTTATTACTATGGTGTCTCAGGCACCCAGAATGTGGTTANAGACAAGGAATGCATGAATTACTTGCTCCTCTACTTTATGTTCTCCAAGTTGATTTGGAGCGTCTCTCAGAAGTTCGGAAACTTTATGAAGATCACTTCACAGACAGATTTGATGGTCTTTTNTGTCAAGAGAACGATCTTTCTTACAGCTTCGATTTTAGGAAATCTCCAGACTCNATGGAGGATGAAATTGGCTCCCATGGAAATGCAACTAAAGTCAATAGTCTTGATGAACTTGATCCTGAGATACAGACCATTGTATTACTAAGTGATGCATATGGAGCTGAAGGTGAACTCGGCATTGTTTTATCAGATAAATTCATGGAGCATGATGCTTACTGTATGTTTGATGCTTTAATGAAGGGGTCCCGTGGTTCNGTTGCAATGGCCGATTTCTTCTCTTCTTGCCCTGTAGCTGGGTCCCATACTGGCCTGCCTCCTGTGATTGAAGCTTCTACTGCATTGTACTATTTGTTGTCTCTTGCTGATTCATCTCTGNATAGCCATCTTTTTGATCTTGGGGTTGAACCCCAGTACTTTTCTCTCCGATGGTTGCGAGTTTTATTTGGACGAGAATTTTCGCTTGACAACCTATTGATCATCTGGGATGAGATCTTTGCATCTGATAATAGCAAAANGGAAAAAAGTGCTGACGATGACATGGATTGTGGGTTCAGGATCTTACATTCACCTCGTGGAGCATTTATCTCAGCTATTGCTGTAGCAATGTTACTTCACTTAAGATCTTCACTACTTGCAACTGAAAACCCTACAACCTGTCTCCAGAGATTATTAAACTTCCCCGAAAACGTTAATATCGAAAAGCTCCTAGAGAAGGCTAAATCCTTGCAGGATCTTGCATTGAGTGTTGATATTTCATCCTCCTCACTTGTGTTTGTAGTGTCTCATTACCAAAGTAAATTGATGTCTACAAGATCTATGATCCTTCCATATGAATCCATGTCTCCAAAAACTCCTCTGAATTTGAAACCGGATAATAGCTACTGGGAAGAAAAGTGGAGAGTCGCCCACAGGGCGGAAGAACTGAAGCAAGATGGTGTAGAAAATCAGGTTCCGACTCGGAAGAAGGGATGGACAGAAAAGGTCAAATTCAGTTTGAGAAGAACAGAATCTGATCCACCTCCATCAAGGATTCAGAATGGCAAAAAGCAGCCCAAGGCATCTGTTAGGCGCAGTTTGTTAGAAGATCTAAATAAGGCACTTGGCTTGGACGAAGACACGGAACAAGAGCAGTGTCATGAAATCATATGCCAGCAGGATAATCTTTCTGAAACAATTGAAGTAGAGCAACAAGACACTAGCTGTAATGGCGACAACGATTACTCATCCGATGATAAATGTCCAAGTGGGAATTCTGGCTGTGAGGTAGACTCGTCTATATATTCTGACGCAACTAGTCCTCCTAGTGAGGCCAATGATCATGAAATCACCTCAGAAAAAAGTAGTGTTGCATCTAACTCATCCCTAGATGAATGCAATGAAACTTCAAATAACGGTCCCAATGATTCAGCCTTTCCATTCTCTGATCCTCCTGAGAGCATACCTCAGACATCAAGGTGCAATAGTGATGATGCAGGAAATTATGAATGCAATGAGACTTCAGATACCAGTCCCAATGGTTCATCCTTTCCAATCCCTGATCCTCCTCAGAACTTACCGCAGACGTCGGGGAGCAATAATGATGGCGCAGGAAATTCAGCCACACATCCTAAAGAGAGAAAACAGAATAAATTCCAGTGGCTTTGGAAGTTTGGACGGAATACTGCCGAGATTATCTCTGAGAAAGTAGGAGGCGCTGCCGACGCTACAGAGTCTGCCAACAGTTGTAACATTCAAAGTAGTACACCATCACCAGCCTCACCTACTGCTAATGGGCATTGTAGTTCTGTTGATTGCAGAGGAGATTCTGTAGACCAGAATNTGATGGGCACTTTGAAGAATATTGGGCAGTCTATGCTTGACCATATTCAGGTGATTGAATCTGTTTTCCAACAAGACCGTGGCCAGGGAGGAGCCTCATTGGAGAACTTATCNAAAAATGTTCTTGTTGGCAAAGGGCATGTTACTGCCATGACAGCTCTCAAGGAGCTTCGGAAAATTAGCAATCTTTTGTCTGAGATGTGAGGTGAATGAAACTCGTATCGAGTGACATGTATGTATATATATTTTGTAATTACAATTCTTTTGCTCCAATAAAAAGTTGAGTTTCTTCCGCACTTCCATTATCCCTCCAGAGTTTTGCAGATATATATGTTCAGAGAGATGAATATATGTAAATATATGTATCCGGGGAGGTTACATAAATAAATTATGACAATTGATAAGTCCGATTTATGCATATGGTTTGCTTGGTTGCAAACCATGTTTTGCATTGTAGAACATTATTATTATTATTCTGTAGCATGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02073	6168	11868	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002073s00041765.1	PF00566.13	RabGAP-TBC	111	199	2.10E-11
Glyur002073s00041765.1	PF00566.13	RabGAP-TBC	264	365	3.60E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.367
SRR1783600	control	7.172
SRR1783602	moderate drought stress	10.338
SRR1811619	moderate drought stress	10.393

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.594
DRR006520	Root Summer glycyrrhizin high producing strain	12.639
DRR006521	Root Winter glycyrrhizin high producing strain	10.705
DRR006522	Root Winter glycyrrhizin high producing strain	10.074
DRR006523	Root Summer glycyrrhizin low producing strain	15.194
DRR006524	Root Summer glycyrrhizin low producing strain	15.530
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.290
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.616

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.487
SRR2868004	Drought Stress (root)	34.486
SRR2967015	Control (root)	29.749

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.828
SRR9715740	Leaf	28.437
SRR9715741	Leaf	29.455
SRR9715739	Root	3.922
SRR9715742	Root	20.678
SRR9715743	Root	16.304

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.256
SRR8749028	MeJA induced 9h	38.957
SRR8749029	MeJA induced 9h	28.444
SRR8749030	Uninduced	20.122
SRR8749031	Uninduced	45.020
SRR8749032	Uninduced	34.914

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.193
SRR8400027	Control - Root	16.044