Gene detail information of Glyur002071s00034582 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G27030.3 | 3.00E-81 | calmodulin 5 |
| NR | AFW78488.1 | 8.64E-102 | calmodulin1 [Zea mays] |
| COG | YP_001866396.1 | 4.00E-36 | signal transduction protein [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|P17928|CALM_MEDSA | 5.00E-104 | Calmodulin |
| trEMBL | tr|Q6LEC4|Q6LEC4_VIGRA | 4.00E-102 | Calmodulin {ECO:0000313|EMBL:AAA34238.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02071 | 20426 | 23703 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002071s00034582.1 | PF13499.1 | EF-hand_7 | 14 | 73 | 2.40E-14 |
| Glyur002071s00034582.1 | PF13499.1 | EF-hand_7 | 86 | 146 | 5.40E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 28.695 |
| SRR1783600 | control | 28.487 |
| SRR1783602 | moderate drought stress | 14.538 |
| SRR1811619 | moderate drought stress | 14.632 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 179.936 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 178.676 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 84.734 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 80.053 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 420.999 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 421.691 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 86.957 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 82.354 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 136.446 |
| SRR2868004 | Drought Stress (root) | 100.434 |
| SRR2967015 | Control (root) | 154.797 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 507.942 |
| SRR9715740 | Leaf | 416.948 |
| SRR9715741 | Leaf | 480.849 |
| SRR9715739 | Root | 85.120 |
| SRR9715742 | Root | 160.583 |
| SRR9715743 | Root | 142.749 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 111.976 |
| SRR8749028 | MeJA induced 9h | 100.631 |
| SRR8749029 | MeJA induced 9h | 101.645 |
| SRR8749030 | Uninduced | 125.587 |
| SRR8749031 | Uninduced | 66.436 |
| SRR8749032 | Uninduced | 76.987 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 107.995 |
| SRR8400027 | Control - Root | 130.590 |