Gene detail

Gene detail information of Glyur002066s00031965.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G62660.1	1.00E-154	galacturonosyltransferase-like 7
NR	XP_007145178.1	0	hypothetical protein PHAVU_007G217100g [Phaseolus vulgaris]
COG	YP_007062961.1	7.00E-22	LPS:glycosyltransferase [Synechococcus sp. PCC 6312]
Swissprot	tr\|Q8VYF4\|GATL7_ARATH	0	Probable galacturonosyltransferase-like 7
trEMBL	tr\|V7BH60\|V7BH60_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW17172.1}

Sequence

Transcript Sequence

>Glyur002066s00031965.1
CTGGCCGACATCAACATCAACATCAAGCCAACCCTAGACCACCTCTCATCGATTCTCGCCGACCGTTTCGACTACAAGTCCAAGAAAAAAAAGAGAAGAGGAAGAGGGTTTGGGTTTGGGTTTGGATTTGGNCGCGTCGAAATGCTGTGGCTAATGCGATTCTCGGGGTTGTTCTCCGCCGCAATGCTCGTGATTGTTCTCTCCCCTTCACTCCAATCCTTCCACCCCGCCGAGGCAATCCGTTCCCAACCGCTTCAGGCGCCTCCTTCCCCGTTCTCCTTCCGTACAGCCTCCCCCTTCCGCAATGCCGACGAATGCGGTCCCAAACCAANAACAACAAGGGGCATTTCCGTCTGCGACCCTTCCCTCGTACACGTGGCAATAACCCTCGACGTCGATTACCTCCGCGGCTCAATCGCCGCNGTNCACTCCATCCTCCAGCATTCCCAGTGCCCGGAGAACATCTTCTTCCACTTCCTCGTCTCGGAGACNAATCTGGAATCCCTTGTGAAATCCACCTTCCCTCAACTCAAGTTCAAGGTGTATTACTTCGATCCGAACATCGTTCGGAACCTGATCTCAACCTCCGTGAGGCAAGCGCTGGAACAGCCGTTGAACTACGCGAGAAACTATTTAGCAGATCTCCTCGAGAGCTGCGTTGGGAGAGTGATATATTTGGATTCTGATCTGGTCGTTGTGGACGACATTTCGAAGCTTTGGAGTACAAGCCTGGGTTCTAGAACCATCGGTGCGCCGGAGTACTGTCACGCGAACTTCACAAANTATTTCACGGCGGGGTTCTGGTCGGACGGGAGGAGGCTGTCGGCGACGTTCTCCGGGAGGAGGCCGTGCTACTTCAACACGGGGGTGATGGTGATAGATCTGGTGAGGTGGAGGAGGAGAGGGTACACGAAGAGGATAGAGAGGTGGATGGAGATTCAGAAGAGCGAGCGGATCTACGAGCTGGGGTCGCTGCCGCCGTTCCTGCTGGTTTTCGCGGGACACGTGGCGCCCATCCAGCACAGGTGGAACCAGCACGGTTTGGGTGGGGATAACGTGAGGGGAAGCTGCAGGGACCTTCATGCGGGTCCGGTTAGCCTCCTGCATTGGTCCGGTAGTGGCAAGCCGTGGCTACGGTTGGACTCCAAACGACCCTGCCCGCTCGACGCGCTTTGGGCTCCTTACGACTTGTACGGACACACTCGCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02066	45140	46348	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016757 transferase activity, transferring glycosyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002066s00031965.1	PF01501.15	Glyco_transf_8	125	380	1.20E-61

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	101.217
SRR1783600	control	99.569
SRR1783602	moderate drought stress	89.613
SRR1811619	moderate drought stress	86.528

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	35.679
DRR006520	Root Summer glycyrrhizin high producing strain	34.240
DRR006521	Root Winter glycyrrhizin high producing strain	12.656
DRR006522	Root Winter glycyrrhizin high producing strain	11.663
DRR006523	Root Summer glycyrrhizin low producing strain	22.605
DRR006524	Root Summer glycyrrhizin low producing strain	22.339
DRR006525	Leaf Summer glycyrrhizin high producing strain	53.968
DRR006526	Leaf Summer glycyrrhizin high producing strain	53.986

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	78.339
SRR2868004	Drought Stress (root)	58.842
SRR2967015	Control (root)	45.672

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	109.993
SRR9715740	Leaf	130.579
SRR9715741	Leaf	72.224
SRR9715739	Root	120.667
SRR9715742	Root	58.695
SRR9715743	Root	77.190

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.016
SRR8749028	MeJA induced 9h	16.132
SRR8749029	MeJA induced 9h	18.587
SRR8749030	Uninduced	6.588
SRR8749031	Uninduced	3.415
SRR8749032	Uninduced	9.539

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	73.333
SRR8400027	Control - Root	73.793