Gene detail

Gene detail information of Glyur002066s00031960

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G47500.1	P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain
NR	AES61721.2	P-loop nucleoside triphosphate hydrolase superfamily protein [Medicago truncatula]
Swissprot	tr\|O81635\|ATK4_ARATH	Kinesin-4
trEMBL	tr\|G7IEJ0\|G7IEJ0_MEDTR	Kinesin-like protein {ECO:0000256\|RuleBase:RU000394}

Sequence

Transcript Sequence

>Glyur002066s00031960.1
ATGGCGGCATTGTCGTTTTCAGTGGCATCTGTGGTGGAGGATGTGCTTCAACAGCACGGTACTCGGCTCAAAGATCTTGACTTGGAATCTAGAAAAGCAGAAGAAGCTGCATTCAGAAGGTATGAAGCAGCAGGGTGGTTGAGAAAAATGGTTGGAGTTGTTGCAGCTAAAGATTTACCAGCAGAGCCCTCTGAGGAAGAGTTTAGGCTTGGTTTGAGAAGTGGGATCATTCTTTGTAATGTTCTTAACAAGGTTCAACCGGGGGCTGTACCCAAGGTTGTGGAGAGTCCTGTTGATTCTTCACAAATCCCTGATGGAGCACCATTATCCGCGTTTCAGTATTTTGAAAACGTGAGGAACTTTCTGGTGGCTGTCCAGGAAATTGGGATTCCCACCTTTGAGGCATCTGATCTGGAGCAAGGAGGAAAATCAGTCAGGATTGTGAATAGCGTCTTGGCCCTTAAGTCCTATAGTGAATGGAAACAGACTGGGGCTAATGGTGTGTGGAAATTTGGTGGAACTATCAAACCCACAATCTCTGCAAAATCTTTTGTGAGAAAAAACTCGGAGCCATTTACTAATTCCTTGTCAAGGAACTCCTCCATCAACGAAAAATCTATGACTGCGTTTACCTCTGACATTGAGTCTAATAAAATGTCTGGTTCTCATTCTTTGGGTATGCTTGTTCGTGCAATACTATTAGATAAGAAGCCAGAAGAAGTTCCAATGTTGGTTGAATCTGTCTTGAGTAAAGTTGTAGAGGAGTTTGAGCAGCGCATTACAAGCCAGGGGGAACAGACAAAAACAACTTCAAGAGGTGCTGTGTCCCAAAGCGATGGAGCTGTACCAAAGTTTATTATGGCACATAAAAAGGTGGATAACAAGATTCCTATGGCAACAAAGAAAGAGGAATTCATCCATAAAAACCATGTTGCTGATGAGGAATCACAAAGACAACTTCTGAAGCAGCAAATGCTCTTTGATCAACACCAAAGAGATATTCAAGGATTAAAGCATACAATTCAAACTACCAAAGCTGGAATGCAGTTCATGCAAATGAAATTTCATGAGGAGTTCTCCAATCTAGGCTTGCACATTCATGGCTTAGCTCATGCTGCTTCTGGATATCATAGAGTTCTTGAAGAAAATCGCANACTATACAATGAAGTCCAGGATCTTAAGGGAAGTATTAGGGTGTACTGTCGAGTAAGACCCTTCTTATCTGGACAACCAAATCATTTGAGCACAGTGGATAACATAGAAGATGGAACTATCACAATTAGTATTCCCTCAAGGAATGGGAAAGGGCGCAGATCCTTCAACTTCAACAAAGTCTTTGGGCCATCTGCAGCACAAGCGGAGGTCTTCTCTGACATGCAGCCACTCATCAGATCTGTTCTTGATGGTTATAATGTTTGCATATTTGCTTATGGCCAAACAGGATCAGGAAAAACTTACACTATGACTGGACCAAAAGAGATCACAGAAAAAAGCCAAGGTGTAAATTACAGGGCTCTAAGTGATTTGTTTTTTACAGCAAATCAAAGAAAAGACACTTTTCGCTATGATGTTAACTCTCATAGAGGGCTCAGTGTACCAGATGCAAGCCTTGTGCCGGTATCATCAACAATTGATGTTATTGAACTAATGAACCTGGGGCAGAGGAATCGCGCAGTCGGAGCAACAGCCCTTAATGACCGTAGTAGCCGATCTCACAGTTGCTTGACTGTTCATGTTCAAGGAAGAGACTTGACATCTGGAACTATCCTACGGGGATGCATGCATCTGGTTGACTTGGCAGGAAGTGAGAGGGTTGACAAATCCGAGGCTACAGGTGATAGACTGAAAGAGGCACAACATATTAACAAATCTCTTTCGGCTTTGGGTGATGTCATTGCTTCCCTTGCTCAGAGAAACCAACACGTCCCTTACAGAAATAGCAAACTAACACAATTACTCCAAGATTCGCTTGGAGGACAGGCCAAGACACTAATGTTTGTTCACATAAGTCCTGAGGTCGATGCTGTTGGAGAAACAATTAGCACATTAAAATTTGCAGAAAGAGTTGCTACAGTTGAACTTGGTGCTGCTCGAGTGAACAAGGATGGGGCAGATGTCAAAGAGCTCAAAGAACAGATTGCCAGCCTTAAGGCAGCATTGGCAAGAAAGGAAGGAGATTCAGAACATTCTTTGTCTGGCAGCTCTGGAAAATATAGGGCAATGGCTAGTGAGCTATCACCCTATCATGCNAAACAGCGGGGCGCAGAAATTGTGGATGATCACTTTGGATGCNGGCAACCAATGATTGATGTAGGCAACATAGAGCAGCTTCAGAGTAATACCCCTTTGAGGCAAAAAACTCACAGCTTTGACTTTGATGAGATATCAGCAAATTCACCACCCTGGCCCCCAGTGAATAGTCCTGGACAAAACTGCGGGGAAGACGATAAAGAAACCGGTTCTGGAGAATGGGTTGATAAGGTCATGGTAAACAAGCAAGATGTGAACAAAACTGAGAACATCTTAGGGTGTTGGGAAGCAGCAGACAATGGTCACTTATCCGAGGCCTTTTATCAGAAATATCTCCAAGATTCTTCCAAAATGTACTCTGAACGATCCTACAATATGTTCATGAGGGGGAACCAGTTTAACATTGCGGGTTCGGATGACACGGATGATGTTGATGCTGCTACCAGTGATTCCTCAGAACCTGACTTACTTTGGCAATTCAATCATTCCAAAGTTACCAGCAGCATAGCCAATGGAAATGGATCATCAAAGGCTAGAAGATTTGTCTCAAAGTCAGCAAAAAGCCCAGAATTGAGCAAGAATAGTATTCATTCTTCTGTTGGTCCTTCACCTTCACGGAAACAATCAAATGGTGTCTTACATCGAACAGCAAGGCATGCAGCTCCTGTTGACATGAAACGTAAAACTGGGAGTAGAAAGTAA

Protein Sequence

>Glyur002066s00031960.1
MAALSFSVASVVEDVLQQHGTRLKDLDLESRKAEEAAFRRYEAAGWLRKMVGVVAAKDLPAEPSEEEFRLGLRSGIILCNVLNKVQPGAVPKVVESPVDSSQIPDGAPLSAFQYFENVRNFLVAVQEIGIPTFEASDLEQGGKSVRIVNSVLALKSYSEWKQTGANGVWKFGGTIKPTISAKSFVRKNSEPFTNSLSRNSSINEKSMTAFTSDIESNKMSGSHSLGMLVRAILLDKKPEEVPMLVESVLSKVVEEFEQRITSQGEQTKTTSRGAVSQSDGAVPKFIMAHKKVDNKIPMATKKEEFIHKNHVADEESQRQLLKQQMLFDQHQRDIQGLKHTIQTTKAGMQFMQMKFHEEFSNLGLHIHGLAHAASGYHRVLEENRXLYNEVQDLKGSIRVYCRVRPFLSGQPNHLSTVDNIEDGTITISIPSRNGKGRRSFNFNKVFGPSAAQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPKEITEKSQGVNYRALSDLFFTANQRKDTFRYDVNSHRGLSVPDASLVPVSSTIDVIELMNLGQRNRAVGATALNDRSSRSHSCLTVHVQGRDLTSGTILRGCMHLVDLAGSERVDKSEATGDRLKEAQHINKSLSALGDVIASLAQRNQHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEVDAVGETISTLKFAERVATVELGAARVNKDGADVKELKEQIASLKAALARKEGDSEHSLSGSSGKYRAMASELSPYHAKQRGAEIVDDHFGCXQPMIDVGNIEQLQSNTPLRQKTHSFDFDEISANSPPWPPVNSPGQNCGEDDKETGSGEWVDKVMVNKQDVNKTENILGCWEAADNGHLSEAFYQKYLQDSSKMYSERSYNMFMRGNQFNIAGSDDTDDVDAATSDSSEPDLLWQFNHSKVTSSIANGNGSSKARRFVSKSAKSPELSKNSIHSSVGPSPSRKQSNGVLHRTARHAAPVDMKRKTGSRK

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02066	13370	19440	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007018 microtubule-based movement

cellular_component
GO:0005871 kinesin complex

molecular_function

GO:0003777 microtubule motor activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0008017 microtubule binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002066s00031960.1	PF00307.26	CH	45	157	5.40E-09
Glyur002066s00031960.1	PF00225.18	Kinesin	523	691	2.80E-59

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.002
SRR1783600	control	1.915
SRR1783602	moderate drought stress	1.709
SRR1811619	moderate drought stress	1.679

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.596
DRR006520	Root Summer glycyrrhizin high producing strain	7.310
DRR006521	Root Winter glycyrrhizin high producing strain	0.153
DRR006522	Root Winter glycyrrhizin high producing strain	0.112
DRR006523	Root Summer glycyrrhizin low producing strain	5.011
DRR006524	Root Summer glycyrrhizin low producing strain	5.077
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.193
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.284

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.864
SRR2868004	Drought Stress (root)	25.982
SRR2967015	Control (root)	24.434

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.264
SRR9715740	Leaf	2.013
SRR9715741	Leaf	2.431
SRR9715739	Root	0.260
SRR9715742	Root	3.680
SRR9715743	Root	3.134

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.337
SRR8749028	MeJA induced 9h	0.056
SRR8749029	MeJA induced 9h	0.152
SRR8749030	Uninduced	0.062
SRR8749031	Uninduced	0.016
SRR8749032	Uninduced	0.080

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.786
SRR8400027	Control - Root	16.135