Gene detail

Gene detail information of Glyur002065s00035686

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G24860.1	3.00E-39	DnaJ/Hsp40 cysteine-rich domain superfamily protein
NR	XP_010049853.1	5.47E-54	PREDICTED: uncharacterized protein LOC104438404 [Eucalyptus grandis]
Swissprot	tr\|Q8GSJ6\|LQY1_ARATH	2.00E-07	Protein disulfide-isomerase LQY1 (Precursor)
trEMBL	tr\|A0A059CXG0\|A0A059CXG0_EUCGR	2.00E-54	Uncharacterized protein {ECO:0000313\|EMBL:KCW82650.1}

Sequence

Transcript Sequence

>Glyur002065s00035686.1
CTAGTAGCCTTTGCGCCACACGAAACCAAAAACCATCACCCGTTATTTTCATTATTATTCAACTGCAACTTGAAACTCTCCTTTTAATCATCTCTATCATCATTCATCTCTCAAACAAGAAAGAAAATGATGAGCCGTGTGTTATGTAGTACTACTATTGGGTCTTCGCTCATATCAAAAACAATGCATAGCCATAGGCATAGCACCACAAGGTTCATCATCATGTCACCAATGGGTAATAGTAATATAACAAGCCGCATCTGGGTCCGGGCTTCCATGGTGGACTCTTCCTCTGATTTTGTTAGCCGCATGGAAAAGGCCTGGTTAATCTCTCAGCAACCAAGGCCAATCGCCTGTTCACCTTGCAACTCAAAAGGGCATATTGAATGCAAATGGTGTGGGGGTACTGGTTTCTTCATTATTGGTGACAACATGCTTTGTGAAATTCCATCCAAAAACACTACCTGTATTATTTGCACTGGAAAGGGATCAATGTGCTGTTCTGATTGTCAAGGAACAGGCTTTCGTGCAAGGTGGTTGGAAGAACCTTCTAATACATCAAAGTAGCAAAGATACTTAAAGGTTTTGAGCTGTGAGATATGTAAGTAAAAACCTTAGTGTGTGTTTGGAAAACTGTTTACANGAATTCCAAAATAACAAAATTGAGTTCTGAGCAAAGCATCAAGACATGTTCTGGGACTTAAAACTCAGTTTTAGTGTTTTAGAATTCGTGCGAACAATTTTATGGGCCAACTGAAGACAGATGTTGCAGCAGCTTCAACAGCAGATTACTTAAAAAGTGAATAATATCAGCTGGCTTGTATTTTAATAACGCTGACATAAATTGTGCATGTACTCGTGTTATTACTTCACAAAATGTAACATGGAACAGAGTTGAAAGTTTTGTTACAAGATGTTTTCTTTCAACATGTAAATGTGTAGTCAACCAATTAGCACTCGTATATAGTTTTGAAGGTACTTCACGTCAAGTANTGTCAACATTCAGTTTTCCTGAATTAAACTTCAAACCTGCTACACAGATTATGGATGTTCTGTCTGGCTCCTCAATAGGTTNTTCAAGCACCACAATGGTGGGGCCATCTATGGTTGATGAATGAAATTNTTTACTCCTACCATTGTTTCTATGTACACAATTCCATTTCTTTACATTTTGAGTAAAATCAAATATGGTTTTATGCTAGTCCTTCCAACAATAGAAGCACACCAGTTAGAGAACCCAAAACAGCTACATCTTAATAAAAGAATAACCAATCGGAGGCAGAGTTCTATTAATACTTCATTACAAGTCTACAACGTTTATGANCTCTGGGTCATAGCAGTTCAATTACTTTGAACTATAGCTGAGAAGAGCAGTTTGTTGAGGTCTCCAGAATCAGAATCATGCGTTTCATTCCCTGCATTAGGACATTCACCAAGACATTAATTTACTGCATTTCTTAATTCTAGCAGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02065	20876	23518	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0031072 heat shock protein binding

GO:0051082 unfolded protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.321
SRR1783600	control	0.275
SRR1783602	moderate drought stress	0.385
SRR1811619	moderate drought stress	0.281

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.736
DRR006520	Root Summer glycyrrhizin high producing strain	0.511
DRR006521	Root Winter glycyrrhizin high producing strain	5.321
DRR006522	Root Winter glycyrrhizin high producing strain	5.371
DRR006523	Root Summer glycyrrhizin low producing strain	1.870
DRR006524	Root Summer glycyrrhizin low producing strain	1.929
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.945
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.184

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.780
SRR2868004	Drought Stress (root)	1.908
SRR2967015	Control (root)	3.226

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.260
SRR9715740	Leaf	25.911
SRR9715741	Leaf	22.690
SRR9715739	Root	0.284
SRR9715742	Root	0.496
SRR9715743	Root	0.206

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.522
SRR8749028	MeJA induced 9h	17.790
SRR8749029	MeJA induced 9h	32.671
SRR8749030	Uninduced	17.178
SRR8749031	Uninduced	43.841
SRR8749032	Uninduced	124.582

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.774
SRR8400027	Control - Root	1.905