Gene detail information of Glyur002064s00038945 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G30810.1 | 7.00E-105 | serine carboxypeptidase-like 29 |
| NR | XP_007138291.1 | 4.66E-155 | hypothetical protein PHAVU_009G196000g [Phaseolus vulgaris] |
| Swissprot | tr|Q949Q7|SCP29_ARATH | 1.00E-127 | Serine carboxypeptidase-like 29 (Precursor) |
| trEMBL | tr|V7AYB8|V7AYB8_PHAVU | 2.00E-155 | Carboxypeptidase {ECO:0000256|RuleBase:RU361156} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02064 | 13784 | 18039 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002064s00038945.1 | PF00450.17 | Peptidase_S10 | 57 | 104 | 6.10E-14 |
| Glyur002064s00038945.1 | PF00450.17 | Peptidase_S10 | 105 | 167 | 3.70E-25 |
| Glyur002064s00038945.1 | PF00450.17 | Peptidase_S10 | 172 | 323 | 2.90E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.606 |
| SRR1783600 | control | 5.614 |
| SRR1783602 | moderate drought stress | 6.654 |
| SRR1811619 | moderate drought stress | 6.651 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.329 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.711 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.751 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.457 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.017 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.840 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.815 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.185 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 25.615 |
| SRR2868004 | Drought Stress (root) | 20.497 |
| SRR2967015 | Control (root) | 22.746 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.361 |
| SRR9715740 | Leaf | 10.394 |
| SRR9715741 | Leaf | 10.996 |
| SRR9715739 | Root | 3.414 |
| SRR9715742 | Root | 5.978 |
| SRR9715743 | Root | 6.283 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.374 |
| SRR8749028 | MeJA induced 9h | 24.377 |
| SRR8749029 | MeJA induced 9h | 9.858 |
| SRR8749030 | Uninduced | 7.648 |
| SRR8749031 | Uninduced | 3.405 |
| SRR8749032 | Uninduced | 3.451 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.928 |
| SRR8400027 | Control - Root | 11.741 |