Gene detail

Gene detail information of Glyur002063s00039889

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G23740.1	7.00E-130	Oxidoreductase, zinc-binding dehydrogenase family protein
NR	AFK35692.1	0	unknown [Lotus japonicus]
COG	NP_469965.1	8.00E-59	hypothetical protein lin0622 [Listeria innocua Clip11262]
Swissprot	tr\|Q9ZUC1\|QORL_ARATH	0	Quinone oxidoreductase-like protein At1g23740, chloroplastic (Precursor)
trEMBL	tr\|I3S600\|I3S600_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK35692.1}

Sequence

Transcript Sequence

>Glyur002063s00039889.1
CTTAAAAAACCAAAGGTTGGTTGAAGCTTGAAACAGAGACAATACAAGTGATAATAAACCTCTGAACAAAAACATGTCTCTTCTCTCTGCTGCACTCTCCTCCACAACTTCCCACCTCACTGTCCTNCCTTCCCTCCCTTCCACCACTTCTCCACTTTCCCTCAGATTTTCCTTCACTTTCCGGGAAAACAGAAACCAAACCACAACCCNCTTCTCCTCAGCAACAAGGCCTAGGTTCGTGGTAAAGTCTCAGGCTTCAACTGCACCTGCTTCCTCTGAGACTGTGAAAGTGACCCCTGTCCCTTCTGACATGAAGGCATGGGTGTATGGNGAATATGGGGGTGTGGATGTGTTGAAGTTTGACTCCAGTGTTGCTGTCCCTGATGTGAAGGAGGATCAGGTCCTTGTTAGAGTTGTTGCTGCTGCTCTTAACCCTGTTGATGCCAAGAGAAGGCAGGGAAAGTTCAAGGCCACTGATTCTCCTCTTCCGACTGTTCCGGGCTATGATGTTGCNGGTGTGGTGGTGAAGGTTGGNAGNCAAGTGAAGGANTTCAAAGTGGGTGATGAAGTATATGGNGATGTAAATGAGAAAGCACTAGAAGGGCCTAAGCAGTTTGGGTCTCTNGCTGAGTACACAGCTGTTGAGGAGAAATTGTTGGCACCAAAGCCTAAGAATTTGGACTTTGCTCAAGCTGCTTCTCTTCCTCTAGCAATTGAGACTGCTTATGAGGGTTTGGAGAAGACTGGATTTTCTCCTGGTAAATCTATTCTTGTTCTAAATGGTTCTGGTGGAGTTGGAAGCCTTGTGATTCAGCTAGCTAAGCAAGTATTTGGAGCTTCAAGGGTTGCTGCCACTTCAAGCACTAGAAATTTGGAGCTGTTGAAAAGCCTGGGAGCTGATTTGGCTATTGACTACACAAAGGAGAACTTTGAAGACTTACCTGAGAAATTTGATGCAGTTTATGATGCCATTGGGCAATGTGACAGGGCAGTGAAGGCTATCAAAGAAGGTGGGAGTGTGGTAGCACTCACAGGTGCTGTTACACCACCTGGCTTCAGATTTGTAGTAACTTCCAATGGAGCTGTTCTGAGGAAACTAAGCCCTTATCTAGAGAGTGGAAAAGTGAAGCCANTTGTAGACCCCAAAGGTCCATTCCCCTTTGCTCAGGTTGCTGAAGCCTTCTCCTACCTTGAAACGAACAGAGCTACCGGAAAGGTTGTTATCCATCCCATCCCATGAATCAAATAAAAGAGGAATAGGCAATTTTGTTATGTACTGTCCAGTGATGTTCACATCCTATGAGTAAATCAGAGTTCAGATGACAGNAAAAAGAATATATAGTGAACTTGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02063	44251	47825	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0008270 zinc ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002063s00039889.1	PF08240.7	ADH_N	108	170	5.10E-11
Glyur002063s00039889.1	PF13602.1	ADH_zinc_N_2	273	384	1.50E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.580
SRR1783600	control	1.633
SRR1783602	moderate drought stress	0.451
SRR1811619	moderate drought stress	0.420

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.925
DRR006520	Root Summer glycyrrhizin high producing strain	1.825
DRR006521	Root Winter glycyrrhizin high producing strain	3.303
DRR006522	Root Winter glycyrrhizin high producing strain	3.303
DRR006523	Root Summer glycyrrhizin low producing strain	2.578
DRR006524	Root Summer glycyrrhizin low producing strain	2.374
DRR006525	Leaf Summer glycyrrhizin high producing strain	241.686
DRR006526	Leaf Summer glycyrrhizin high producing strain	239.411

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.787
SRR2868004	Drought Stress (root)	8.049
SRR2967015	Control (root)	6.673

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	158.239
SRR9715740	Leaf	283.022
SRR9715741	Leaf	149.469
SRR9715739	Root	1.547
SRR9715742	Root	1.178
SRR9715743	Root	0.844

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.366
SRR8749028	MeJA induced 9h	1.570
SRR8749029	MeJA induced 9h	1.979
SRR8749030	Uninduced	1.291
SRR8749031	Uninduced	0.198
SRR8749032	Uninduced	0.629

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.724
SRR8400027	Control - Root	2.480