Gene detail information of Glyur002058s00032911 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G33205.1 | 9.00E-80 | Serinc-domain containing serine and sphingolipid biosynthesis protein |
| NR | XP_006605737.1 | 6.02E-146 | PREDICTED: probable serine incorporator-like isoform X1 [Glycine max] |
| trEMBL | tr|K7N283|K7N283_SOYBN | 5.00E-148 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G19930.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02058 | 45095 | 47799 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002058s00032911.1 | PF03348.10 | Serinc | 11 | 131 | 8.00E-19 |
| Glyur002058s00032911.1 | PF03348.10 | Serinc | 140 | 215 | 3.10E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.553 |
| SRR1783600 | control | 0.631 |
| SRR1783602 | moderate drought stress | 0.549 |
| SRR1811619 | moderate drought stress | 0.781 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.350 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.558 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.143 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.248 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.044 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.177 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.003 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 22.887 |
| SRR2868004 | Drought Stress (root) | 7.432 |
| SRR2967015 | Control (root) | 5.670 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.023 |
| SRR9715740 | Leaf | 0.036 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.834 |
| SRR9715742 | Root | 0.030 |
| SRR9715743 | Root | 0.803 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.420 |
| SRR8749028 | MeJA induced 9h | 0.169 |
| SRR8749029 | MeJA induced 9h | 0.530 |
| SRR8749030 | Uninduced | 0.120 |
| SRR8749031 | Uninduced | 0.079 |
| SRR8749032 | Uninduced | 0.077 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 40.454 |
| SRR8400027 | Control - Root | 30.371 |