Gene detail

Gene detail information of Glyur002058s00032907

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G23990.1	heat shock protein 60
NR	XP_007145430.1	hypothetical protein PHAVU_007G238500g [Phaseolus vulgaris]
COG	YP_006371119.1	protein GroL [Tistrella mobilis KA081020-065]
Swissprot	tr\|Q05046\|CH62_CUCMA	Chaperonin CPN60-2, mitochondrial (Precursor)
trEMBL	tr\|V7BHP9\|V7BHP9_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW17424.1}

Sequence

Transcript Sequence

>Glyur002058s00032907.1
AGGATTGCTAGGAGTAGCAGCCAACAGATTGGAAGTAGTTTGAGATGGAGCAGAAACTATGCCGCCAAAGACATTAGATTTGGCGTGGAGGCTCGGGNTGTGATGCTTAAGGGTGTTGAAGAGCTTGCTGATGCTGTCAAAGTAACCATGGGTCCAAAGGGGCGTAATGTGGTGATTGAGCAAAGCTTTGGTGCCCCTAAAGTGACCAAGGATGGAGTAACTGTTGCAAAGAGCATTGAATTCAAGGACAAAATTAAGAATATTGGTGCCAGTCTTGTAAAGCAGGTTGCGAATGCTACCAATGACNTGGCTGGTGATGGAACCACCTGTGCTACAGTCCTTACCCGAGCAATATTTACCGAAGGCTGCAAGTCAGTTGCAGCTGGAATGAATGCCATGGATCTGAGGCGNGGTATAACCATGGCTGTTGATGCTGTGGTGACAAACTTGAAAAGCAGAGCACGGATGATTAGCACCTCTGAAGAAATAGCACAGGTTGGCACAATATCTGCTAATGGGGAGAGAGAAATTGGTGAGTTAATTGCAAAAGCTATGGAGAAAGTTGGCAAAGAGGGAGTAATCACAATTGCAGATGGCAAAACTTTGTATAATGAGTTGGAAGTTGTTGAAGGAATGAAGCTTGACAGGGGCTACATATCTCCTTATTTCATAACAAACCAGAAGAACCAGAAATGTGAACTTGAGGATCCTCTCATTCTAATCCACGAGAAGAAAATCTCAAGTATAAATGCTGTAGTTAAAGTCTTGGAGTTGGCTTTGAAGAGACAAAGACCTTTATTGATTGTTGCTGAGGATGTGGAAAGTGATGCACTTGCCACACTTATTCTAAATAAGCTTCGTGCTGGAATTAAGGTATGNGCCATTAAAGCTCCTGGTTTTGGTGAAAATAGGAAATCTGGTCTTCAAGATCTTGCAGTTCTTACAGGAGGAGCACTTATCACTGAAGAGCTTGGCATGAATCTTGAAAAAGTGGATCTGGATATGCTTGGCACTTGCAAAAAAATAACAATTTCTAAGGATGACACTGTCATTCTTGANGGGGCAGGTGACAAGAAAGCGATCGAGGAAAGATGTGAACAGATTAGGTCAGCAATTGAAAATAGCACTTCTGATTATGACAAGGAAAAGTTACAGGAAAGATTAGCCAAACTTTCTGGGGGTGTTGCAGTGCTTAAGATTGGAGGAGCCAGTGAGGCCGAAGTTAGTGAGAAAAAGGACAGAGTGACAGATGCCTTGAATGCAACTAAGGCAGCTGTAGAGGAGGGCATAGTACCCGGTGGTGGTGTTGCTCTTCTATATGCATCAAAAGAGTTGGACAATCTTCAAACTGCCAACTTTGATCAAAAGATTGGTGTCCAGATTATCCAAAATGCTTTAAAGACACCTGTGCTCACAATTGCGTCAAATGCGGGAGTTGAGGGCGCAGTTGTTGTTGGCAAATTATGGGAACAGGATAATCATGAACTTGGGTATGATGCAGCCAAAGGTGAATATGTTGATATGGTTAAAGCTGGAATCATAGACCCCTTGAAGGTTATTAGAACAGCCTTGGTTGATGCAGCCAGTGTTTCATCTTTGATGACAACAACTGAAGCTGTTGTGGCTGAATTTCCAAAGGATGATAAAGATGTTCCATCTATGGCTGGTGGCATGGGTGGAATGGATTACTAACCAGCTTCCATTTGATTGGGACCTGAAACAAAGAAAGAATGGTGCTGAACCCACTTAACATATTTTTGTTTTATTTGGTTTTAATTATTTGTTGTGAGAAGGCATCAATCAATGTAATCATAGTGAGGGGTCAAGATGTAGGTANGAAAAATGTGACTTGCAATAATTCCAATTATAAGAGATTTGGAACAATTTTTACCCNCCAAATTATAAGGCATTGTTCCAACGTGAAATTGTCAATGGAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02058	13163	17417	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006457 protein folding

GO:0042026 protein refolding

cellular_component
GO:0005737 cytoplasm

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002058s00032907.1	PF00118.19	Cpn60_TCP1	8	509	5.70E-118

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.101
SRR1783600	control	15.360
SRR1783602	moderate drought stress	13.409
SRR1811619	moderate drought stress	13.242

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	46.017
DRR006520	Root Summer glycyrrhizin high producing strain	45.415
DRR006521	Root Winter glycyrrhizin high producing strain	43.858
DRR006522	Root Winter glycyrrhizin high producing strain	42.306
DRR006523	Root Summer glycyrrhizin low producing strain	39.997
DRR006524	Root Summer glycyrrhizin low producing strain	40.173
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.727
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.663

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	80.879
SRR2868004	Drought Stress (root)	33.228
SRR2967015	Control (root)	32.456

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.653
SRR9715740	Leaf	16.552
SRR9715741	Leaf	10.907
SRR9715739	Root	3.452
SRR9715742	Root	30.221
SRR9715743	Root	27.263

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	154.697
SRR8749028	MeJA induced 9h	90.835
SRR8749029	MeJA induced 9h	110.135
SRR8749030	Uninduced	6.605
SRR8749031	Uninduced	3.877
SRR8749032	Uninduced	13.228

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.495
SRR8400027	Control - Root	29.063