Gene detail information of Glyur002055s00039240 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G58170.1 | 5.00E-28 | Disease resistance-responsive (dirigent-like protein) family protein |
| NR | AFK41387.1 | 3.38E-104 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9SS03|DIR21_ARATH | 8.00E-46 | Dirigent protein 21 (Precursor) |
| trEMBL | tr|I3SM95|I3SM95_LOTJA | 1.00E-104 | Uncharacterized protein {ECO:0000313|EMBL:AFK41387.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02055 | 27167 | 28546 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002055s00039240.1 | PF03018.9 | Dirigent | 45 | 195 | 3.80E-48 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 303.899 |
| SRR1783600 | control | 303.443 |
| SRR1783602 | moderate drought stress | 228.769 |
| SRR1811619 | moderate drought stress | 227.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.153 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.150 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 541.667 |
| SRR2868004 | Drought Stress (root) | 892.637 |
| SRR2967015 | Control (root) | 1034.378 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.092 |
| SRR9715740 | Leaf | 0.236 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 890.520 |
| SRR9715742 | Root | 762.353 |
| SRR9715743 | Root | 730.077 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.097 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1541.221 |
| SRR8400027 | Control - Root | 1094.759 |