Gene detail information of Glyur002055s00039238 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G58170.1 | 3.00E-33 | Disease resistance-responsive (dirigent-like protein) family protein |
| NR | AFK41387.1 | 1.05E-110 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9LID5|DIR7_ARATH | 4.00E-50 | Dirigent protein 7 (Precursor) |
| trEMBL | tr|I3SM95|I3SM95_LOTJA | 4.00E-111 | Uncharacterized protein {ECO:0000313|EMBL:AFK41387.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02055 | 11525 | 12271 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002055s00039238.1 | PF03018.9 | Dirigent | 71 | 221 | 2.50E-49 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 233.307 |
| SRR1783600 | control | 235.027 |
| SRR1783602 | moderate drought stress | 181.886 |
| SRR1811619 | moderate drought stress | 182.048 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.232 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.153 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.448 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.604 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.825 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.034 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.373 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.496 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 300.165 |
| SRR2868004 | Drought Stress (root) | 551.004 |
| SRR2967015 | Control (root) | 610.124 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.569 |
| SRR9715740 | Leaf | 2.090 |
| SRR9715741 | Leaf | 10.536 |
| SRR9715739 | Root | 79.262 |
| SRR9715742 | Root | 84.893 |
| SRR9715743 | Root | 82.013 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 89.944 |
| SRR8749028 | MeJA induced 9h | 166.546 |
| SRR8749029 | MeJA induced 9h | 35.510 |
| SRR8749030 | Uninduced | 130.123 |
| SRR8749031 | Uninduced | 51.278 |
| SRR8749032 | Uninduced | 16.569 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 541.183 |
| SRR8400027 | Control - Root | 369.869 |