Gene detail information of Glyur002055s00039237 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G22410.1 | 2.00E-141 | SLOW GROWTH 1 |
| NR | XP_004493626.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Cicer arietinum] |
| Swissprot | tr|Q9SJZ3|PP169_ARATH | 5.00E-167 | Pentatricopeptide repeat-containing protein At2g22410, mitochondrial (Precursor) |
| trEMBL | tr|A0A072UCU9|A0A072UCU9_MEDTR | 0 | PPR containing plant-like protein {ECO:0000313|EMBL:KEH23680.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02055 | 5882 | 9549 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002055s00039237.1 | PF01535.15 | PPR | 60 | 88 | 1.30E-05 |
| Glyur002055s00039237.1 | PF13041.1 | PPR_2 | 158 | 206 | 8.80E-09 |
| Glyur002055s00039237.1 | PF12854.2 | PPR_1 | 259 | 286 | 1.70E-05 |
| Glyur002055s00039237.1 | PF13041.1 | PPR_2 | 290 | 337 | 3.80E-09 |
| Glyur002055s00039237.1 | PF13041.1 | PPR_2 | 393 | 440 | 1.10E-12 |
| Glyur002055s00039237.1 | PF01535.15 | PPR | 468 | 491 | 0.9 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.920 |
| SRR1783600 | control | 3.026 |
| SRR1783602 | moderate drought stress | 4.141 |
| SRR1811619 | moderate drought stress | 3.911 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.357 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.472 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.315 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.277 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.169 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.114 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.591 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.562 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.359 |
| SRR2868004 | Drought Stress (root) | 3.574 |
| SRR2967015 | Control (root) | 4.630 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.435 |
| SRR9715740 | Leaf | 0.838 |
| SRR9715741 | Leaf | 0.734 |
| SRR9715739 | Root | 1.042 |
| SRR9715742 | Root | 2.632 |
| SRR9715743 | Root | 1.879 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.181 |
| SRR8749028 | MeJA induced 9h | 1.747 |
| SRR8749029 | MeJA induced 9h | 0.597 |
| SRR8749030 | Uninduced | 0.762 |
| SRR8749031 | Uninduced | 0.744 |
| SRR8749032 | Uninduced | 0.933 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.003 |
| SRR8400027 | Control - Root | 6.293 |