Gene detail information of Glyur002055s00039236 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G54690.1 | 3.00E-46 | gamma histone variant H2AX |
| NR | XP_003521229.1 | 1.70E-88 | PREDICTED: histone H2AX [Glycine max] |
| Swissprot | tr|O65759|H2AX_CICAR | 2.00E-84 | Histone H2AX |
| trEMBL | tr|C6TFW1|C6TFW1_SOYBN | 3.00E-88 | Histone H2A {ECO:0000256|RuleBase:RU003556} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02055 | 942 | 1522 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002055s00039236.1 | PF00125.19 | Histone | 26 | 99 | 3.90E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.025 |
| SRR1783600 | control | 18.705 |
| SRR1783602 | moderate drought stress | 10.279 |
| SRR1811619 | moderate drought stress | 10.763 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.866 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.352 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.183 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.145 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.546 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.585 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.967 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.010 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 88.158 |
| SRR2868004 | Drought Stress (root) | 39.513 |
| SRR2967015 | Control (root) | 40.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 30.597 |
| SRR9715740 | Leaf | 0.221 |
| SRR9715741 | Leaf | 10.030 |
| SRR9715739 | Root | 12.985 |
| SRR9715742 | Root | 8.384 |
| SRR9715743 | Root | 7.963 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 68.951 |
| SRR8749028 | MeJA induced 9h | 32.415 |
| SRR8749029 | MeJA induced 9h | 38.699 |
| SRR8749030 | Uninduced | 1.822 |
| SRR8749031 | Uninduced | 5.443 |
| SRR8749032 | Uninduced | 5.131 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 60.273 |
| SRR8400027 | Control - Root | 46.612 |