Gene detail information of Glyur002051s00038335.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G57040.1 | 1.00E-43 | response regulator 9 |
| NR | AFK43691.1 | 3.38E-105 | unknown [Lotus japonicus] |
| COG | YP_001864852.1 | 3.00E-12 | response regulator receiver protein [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|O80366|ARR9_ARATH | 5.00E-58 | Two-component response regulator ARR9 |
| trEMBL | tr|I3STU9|I3STU9_LOTJA | 1.00E-105 | Uncharacterized protein {ECO:0000313|EMBL:AFK43691.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02051 | 20500 | 24717 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Orphans |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002051s00038335.1 | PF00072.19 | Response_reg | 28 | 164 | 1.30E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.107 |
| SRR1783600 | control | 3.188 |
| SRR1783602 | moderate drought stress | 2.058 |
| SRR1811619 | moderate drought stress | 2.036 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.096 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.077 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.116 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.113 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.291 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.360 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.032 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.215 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.941 |
| SRR2868004 | Drought Stress (root) | 5.533 |
| SRR2967015 | Control (root) | 13.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.246 |
| SRR9715740 | Leaf | 2.612 |
| SRR9715741 | Leaf | 0.804 |
| SRR9715739 | Root | 1.310 |
| SRR9715742 | Root | 1.139 |
| SRR9715743 | Root | 1.443 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.195 |
| SRR8749028 | MeJA induced 9h | 2.040 |
| SRR8749029 | MeJA induced 9h | 2.226 |
| SRR8749030 | Uninduced | 0.132 |
| SRR8749031 | Uninduced | 0.339 |
| SRR8749032 | Uninduced | 0.290 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.279 |
| SRR8400027 | Control - Root | 40.711 |