Gene detail

Gene detail information of Glyur002045s00039431

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G55610.2	0	BRI1 like
NR	XP_004499678.1	0	PREDICTED: serine/threonine-protein kinase BRI1-like 1-like [Cicer arietinum]
COG	YP_004775215.1	3.00E-41	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9ZWC8\|BRL1_ARATH	0	Serine/threonine-protein kinase BRI1-like 1 (Precursor)
trEMBL	tr\|A0A072UTE9\|A0A072UTE9_MEDTR	0	LRR receptor-like kinase family protein {ECO:0000313\|EMBL:KEH32872.1}

Sequence

Transcript Sequence

>Glyur002045s00039431.1
ATGTCATGGTCACCAAGAAGAAGATGTAGAACAGAACCAGCACCAGCAACAACATCAACAACAACTACAACAACAACAACAAGGGTAGTGTTGTTGTTCTCATTGATGACAACAACATTAACCTTAACAACTTCTGATTCTTCTTCTGCAGCAACGTTGTTGATTCAGTTCAAGCACTCACATGTTTCCTCTGACCCTTACAACTTCCTCTCTGACTGGACTTATANCAACTCTTCCTCTTCTTCTCCGTGCACGTGGCGCGGCGTGTCTTGTTCAGCCGCCGGGGAAGTAACCACCGTGAACCTCACCGGCGCGTCAATCTCCGGCAACNTCAACCTCCCAACACTAACCTCCATCCCTTCTCTTCAACGCCTCATCCTACGTGGCAATTCCTTCTCCTCTTTCAANCTNTCTGTTTCCTCCTTTTGTTCTCTTATCACCCTCGACCTTTCATCCACCAATTTTTCCGGTTACTTTCCCTTCCAAAACCTCGTACCCTGTCATAGCCTCAGTTATCTCAACCTCTCCCACAACCTGATAACCGGTTCAACCGGTTTTGCTTCTTCTTCTTCTCCTCTTGTTGAACTTGACTTATCGAGGAACCGATTTTCTGACATTAGCTTTGTGTTGTCTGTTATTAAGAACTGTGAGAGTTTGGTGCTGTTGAATTTCTCTGACAACAGATTCGCGGGTCAACTCAGCGAGTCACTTGTTGTTCCTTCAGCGAATCTCTCTACTTTGGACCTGTCTTATAATCTGCTATCTGGGAAGTTACCCTCTTTTGTTCTTGGGGGTGGTGGTGTTGAGGTTTTGGATCTGTCAAGCAACAATTTTTCAGGTGGGTTTTCAAGGTTTGATTTTGGTGGGTGCAAGAGGCTTGTTTCGTTGAGTCTCTCTCACAATGTGTTATCAGATGGTGAGTTTTTTCCACCTAGCTTGGGGAACTGTAAGGTGCTTGAGACTCTTGATCTTTCCCATAATGAGCTAAAGTTGAAGATTCCTGGGGTTCTTCTTGGTGGGTTGAGGAGTTTGAGGGGACTGTTTTTGGGGCATAATCAGTTTTTTGGGGAGATACCTATGGAGCTTGGAATGGCTTGTGGGTCTTTGGAAGTGCTTGATCTATCTGAGAATAGGCTTTCTGGTGAGTTGCCTTTGACCTTTGGGAAGTGTTCTTCTTTGAGGAGTCTTAACCTTGCTAAGAATTATCTATCTGGGAAATTCCTTGATTCTGTTGTCAGCAACCTTTCAAGCCTTAGGTATCTCTATGTGCCATTCAATAACATAACTGGGCATGTCCCTTTGTCTCTTGTTAATTGTACACAGCTTCAGGTTCTTGACCTCAGTTCCAATTACTTCACCGGCAATGTCCCTTCCGGGTTTTGTTCCTCTAAGTTGGCTTTGGAGAAGATGCTTCTGGCTGACAATTACCTTTCAGGGGTTGTGCCTGAAGGGCTTGGTGGCTGCAANAGTTTGAGGACTATTGATTTTAGCTTCAACAACTTGGGTGGCTCCATACCCTTGGAGGTTTGGTCATTGCCTAATCTCTCTGACTTGATCATGTGGGCAAACAACCTCACTGGGGAGATTCCAGAGGGAATCTGTGTCAATGGAGGGAACCTTGAGACATTGATTCTCAACAACAACTTCATTTCTGGCTCCATTCCTCAGTCCATTGCCAACTGCACTAAAATGGTTTGGGTGTCCCTGGCAAGCAACCGCATCACCGGGGGAATACCTGCTGGTATTGGGAACCTGAATTCACTTGCCATCCTCCAACTTGGTAACAATTCACTCACTGGAAAGATCCCTCCTGAGATTGGAATGTGTAAGAGGCTCATATGGTTGGATTTGAATAGCAATAACCTCACTGGTACTATCCCATCTGAGCTTGCCAATCAAGCCGGATTGGTTGTCCCGGGGAGCGTTTCGGGGAAGCAGTTTGCATTTGTGAGGAATGAGGGAGGGACTAGTTGTAGGGGAGCTGGAGGGCTGGTTGAGTTTGAGGACATCAGGGTGGAGAGGCTTGAAGGTTTTCCCATGGTCCATTCTTGCCCATTGACAAGGATCTACTCTGGTTGGACAGTTTATACCTTCACCTCCAATGGCAGCATGATCTACCTTGACCTTTCCTACAATCTCTTGTCAGGGAGTATTCCTGAAAACTTTGGCTCAATGGCCTATTTGCAGGTCTTGAATCTGGGACACAATAGGCTCACTGGAAACATTCCAGATAGCTTTGGTGGCCTAAAAGCCATAGGAGTGCTTGATCTCTCTCACAATGACCTTCAAGGATTCATCCCTGGCTCACTGGAATCTCTATCTTTCCTCAGTGATCTNGATGTGTCTAATAACAACCTCACAGGATCCATTCCTTCTGGGGGTCAGCTAACCACTTTCCCTTCATCTAGATATGAGAACAACTCCAACCTTTGTGGTGTCCCTTTACCACCGTGTGGCGCTTCGAAATCAAACCACTCAGCAGCTTCTCATACTTGGAAGAAGAAGCAACCTATTGGAGCAGTTATTGCCATTGGCATCCTTTCCTTCCTCTTGTTTACTACTGCCCTTGTGTTAGCCCTATATCGACTGGAGAAGGCCCGGAAGAAGGAGGAACGGAGAGAAAAATACATAGAAAGCCTCCCAACTTCAGGTAGCAGCAGTTGGAAACTTTCCAGCTTTCCTGAGCCTCTAAGCATCAATGTTGCCACCTTTGAGAAGCCTCTGAGGAAGCTGACATTTGCACATCTTCTGGAGGCTACTAATGGTTTCAGCGCCGATAGCTTGATAGGGTCCGGAGGGTTCGGTGAAGTCTACAAGGCTAAGCTGAAAGATGGTTGTGTTGTTGCTATCAAGAAGCTCATTCATGTCACAGGTCAGGGAGACAGAGAGTTCATGGCTGAAATGGAAACTATTGGGAAGATTAAGCATAGGAACCTGGTTCCACTGCTTGGTTACTGTAAAGTTGGAGAGGAGAGGCTACTTGTGTATGAGTACATGAAATGGGGAAGTCTAGAGGCTGTTCTACATGAAAGGGCTTCCAAGGGAGGAGGAGGAGGTGGTTCAAAGCTTGATTGGGAAGTAAGAAAGAAGATAGCCATAGGGTCAGCAAGAGGTCTTGCATTTCTTCACCATAGTTGCATACCTCATATCATACACAGGGACATGAAGTCAAGCAATATTCTTCTTGATGAGAATTTTGAGGCCAGGGTCTCAGATTTCGGCATGGCAAGATTGGTTAATGCACTTGACACTCATCTCACAGTAAGCACACTTGCAGGAACACCAGGCTATGTACCTCCTGAGTACTACCAGAGTTTTAGATGCACAGCAAAAGGGGATGTCTATAGTTATGGTGTCATACTGCTAGAGCTTCTATCAGGGAAGAGGCCAATCGACTCGTCTGAGTTTGGTGATGACAACAACCTTGTTGGATGGTCTAAGAAGCTTTATAGAGAGAGAAGAGTTAGTGAAATACTTGATCCTGACTTAGTCATGCAAACATCTAGTGAAGGTGAACTGTGCCAGTATTTGAGAATTGCCTTTGAATGCCTAGATGAAAGGCCATACCGGCGCCCAACCATGATACAAGTGATGGCAATGTTTAAAGAGCTTCAGGTTGACACAACAGATAATGATATCCTTGATGGCTTCTCTCTGAAAGACGATGTTATTGATGAGGCATGA

Protein Sequence

>Glyur002045s00039431.1
MSWSPRRRCRTEPAPATTSTTTTTTTTRVVLLFSLMTTTLTLTTSDSSSAATLLIQFKHSHVSSDPYNFLSDWTYXNSSSSSPCTWRGVSCSAAGEVTTVNLTGASISGNXNLPTLTSIPSLQRLILRGNSFSSFXLSVSSFCSLITLDLSSTNFSGYFPFQNLVPCHSLSYLNLSHNLITGSTGFASSSSPLVELDLSRNRFSDISFVLSVIKNCESLVLLNFSDNRFAGQLSESLVVPSANLSTLDLSYNLLSGKLPSFVLGGGGVEVLDLSSNNFSGGFSRFDFGGCKRLVSLSLSHNVLSDGEFFPPSLGNCKVLETLDLSHNELKLKIPGVLLGGLRSLRGLFLGHNQFFGEIPMELGMACGSLEVLDLSENRLSGELPLTFGKCSSLRSLNLAKNYLSGKFLDSVVSNLSSLRYLYVPFNNITGHVPLSLVNCTQLQVLDLSSNYFTGNVPSGFCSSKLALEKMLLADNYLSGVVPEGLGGCXSLRTIDFSFNNLGGSIPLEVWSLPNLSDLIMWANNLTGEIPEGICVNGGNLETLILNNNFISGSIPQSIANCTKMVWVSLASNRITGGIPAGIGNLNSLAILQLGNNSLTGKIPPEIGMCKRLIWLDLNSNNLTGTIPSELANQAGLVVPGSVSGKQFAFVRNEGGTSCRGAGGLVEFEDIRVERLEGFPMVHSCPLTRIYSGWTVYTFTSNGSMIYLDLSYNLLSGSIPENFGSMAYLQVLNLGHNRLTGNIPDSFGGLKAIGVLDLSHNDLQGFIPGSLESLSFLSDLDVSNNNLTGSIPSGGQLTTFPSSRYENNSNLCGVPLPPCGASKSNHSAASHTWKKKQPIGAVIAIGILSFLLFTTALVLALYRLEKARKKEERREKYIESLPTSGSSSWKLSSFPEPLSINVATFEKPLRKLTFAHLLEATNGFSADSLIGSGGFGEVYKAKLKDGCVVAIKKLIHVTGQGDREFMAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKWGSLEAVLHERASKGGGGGGSKLDWEVRKKIAIGSARGLAFLHHSCIPHIIHRDMKSSNILLDENFEARVSDFGMARLVNALDTHLTVSTLAGTPGYVPPEYYQSFRCTAKGDVYSYGVILLELLSGKRPIDSSEFGDDNNLVGWSKKLYRERRVSEILDPDLVMQTSSEGELCQYLRIAFECLDERPYRRPTMIQVMAMFKELQVDTTDNDILDGFSLKDDVIDEA

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02045	23515	27198	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002045s00039431.1	PF08263.7	LRRNT_2	51	92	2.80E-06
Glyur002045s00039431.1	PF13516.1	LRR_6	167	182	1.7
Glyur002045s00039431.1	PF13855.1	LRR_8	243	302	3.00E-07
Glyur002045s00039431.1	PF00560.28	LRR_1	319	340	0.4
Glyur002045s00039431.1	PF13855.1	LRR_8	368	428	4.30E-08
Glyur002045s00039431.1	PF00560.28	LRR_1	441	461	0.12
Glyur002045s00039431.1	PF13855.1	LRR_8	513	574	9.20E-07
Glyur002045s00039431.1	PF13516.1	LRR_6	609	632	0.2
Glyur002045s00039431.1	PF00560.28	LRR_1	705	724	0.32
Glyur002045s00039431.1	PF13855.1	LRR_8	727	786	9.00E-10
Glyur002045s00039431.1	PF00069.20	Pkinase	926	1198	1.10E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.654
SRR1783600	control	15.594
SRR1783602	moderate drought stress	8.705
SRR1811619	moderate drought stress	8.541

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.879
DRR006520	Root Summer glycyrrhizin high producing strain	5.619
DRR006521	Root Winter glycyrrhizin high producing strain	2.177
DRR006522	Root Winter glycyrrhizin high producing strain	2.169
DRR006523	Root Summer glycyrrhizin low producing strain	6.362
DRR006524	Root Summer glycyrrhizin low producing strain	6.401
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.261
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.235

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.182
SRR2868004	Drought Stress (root)	22.418
SRR2967015	Control (root)	22.763

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.480
SRR9715740	Leaf	3.897
SRR9715741	Leaf	2.850
SRR9715739	Root	17.778
SRR9715742	Root	24.798
SRR9715743	Root	22.660

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.187
SRR8749028	MeJA induced 9h	60.361
SRR8749029	MeJA induced 9h	36.897
SRR8749030	Uninduced	16.690
SRR8749031	Uninduced	31.777
SRR8749032	Uninduced	28.013

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.146
SRR8400027	Control - Root	19.657