Gene detail information of Glyur002040s00043565 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G01510.1 | 4.00E-52 | like SEX4 1 |
| NR | XP_003555052.1 | 4.56E-80 | PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic-like [Glycine max] |
| Swissprot | tr|F4J117|LSF1_ARATH | 5.00E-61 | Phosphoglucan phosphatase LSF1, chloroplastic (Precursor) |
| trEMBL | tr|K7MWV9|K7MWV9_SOYBN | 8.00E-82 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G11100.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02040 | 47711 | 49119 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.165 |
| SRR1783600 | control | 9.049 |
| SRR1783602 | moderate drought stress | 5.562 |
| SRR1811619 | moderate drought stress | 5.533 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.971 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.598 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.679 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.365 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.654 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.100 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.815 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.737 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.357 |
| SRR2868004 | Drought Stress (root) | 10.584 |
| SRR2967015 | Control (root) | 11.529 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 19.634 |
| SRR9715740 | Leaf | 24.392 |
| SRR9715741 | Leaf | 17.253 |
| SRR9715739 | Root | 5.695 |
| SRR9715742 | Root | 6.690 |
| SRR9715743 | Root | 5.763 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.787 |
| SRR8749028 | MeJA induced 9h | 4.770 |
| SRR8749029 | MeJA induced 9h | 6.891 |
| SRR8749030 | Uninduced | 5.401 |
| SRR8749031 | Uninduced | 3.606 |
| SRR8749032 | Uninduced | 3.275 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.523 |
| SRR8400027 | Control - Root | 17.356 |