Gene detail information of Glyur002040s00043564 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G01510.1 | 5.00E-75 | like SEX4 1 |
| NR | XP_003555052.1 | 6.99E-161 | PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic-like [Glycine max] |
| Swissprot | tr|F4J117|LSF1_ARATH | 1.00E-87 | Phosphoglucan phosphatase LSF1, chloroplastic (Precursor) |
| trEMBL | tr|K7MWV8|K7MWV8_SOYBN | 3.00E-161 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G11100.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02040 | 28332 | 30673 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.941 |
| SRR1783600 | control | 14.702 |
| SRR1783602 | moderate drought stress | 12.602 |
| SRR1811619 | moderate drought stress | 12.574 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.305 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.815 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.270 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.863 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.337 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.447 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.302 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.161 |
| SRR2868004 | Drought Stress (root) | 8.047 |
| SRR2967015 | Control (root) | 8.456 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.959 |
| SRR9715740 | Leaf | 11.067 |
| SRR9715741 | Leaf | 8.920 |
| SRR9715739 | Root | 3.458 |
| SRR9715742 | Root | 7.734 |
| SRR9715743 | Root | 6.155 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.333 |
| SRR8749028 | MeJA induced 9h | 4.211 |
| SRR8749029 | MeJA induced 9h | 1.272 |
| SRR8749030 | Uninduced | 0.816 |
| SRR8749031 | Uninduced | 0.966 |
| SRR8749032 | Uninduced | 0.711 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.258 |
| SRR8400027 | Control - Root | 15.612 |