Gene detail information of Glyur002039s00041968 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G76990.5 | 0 | ACT domain repeat 3 |
| NR | XP_003523410.1 | 0 | PREDICTED: uncharacterized protein LOC100789173 isoform X1 [Glycine max] |
| COG | YP_001602325.1 | 1.00E-08 | PII uridylyl-transferase [Gluconacetobacter diazotrophicus PAl 5] |
| Swissprot | tr|O49285|ACR3_ARATH | 0 | ACT domain-containing protein ACR3 {ECO:0000305} |
| trEMBL | tr|K7KM40|K7KM40_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G42167.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02039 | 12772 | 18043 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002039s00041968.1 | PF01842.20 | ACT | 37 | 85 | 4.40E-08 |
| Glyur002039s00041968.1 | PF01842.20 | ACT | 130 | 199 | 5.40E-10 |
| Glyur002039s00041968.1 | PF01842.20 | ACT | 271 | 317 | 0.00021 |
| Glyur002039s00041968.1 | PF01842.20 | ACT | 346 | 402 | 3.80E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.683 |
| SRR1783600 | control | 1.603 |
| SRR1783602 | moderate drought stress | 7.225 |
| SRR1811619 | moderate drought stress | 7.274 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.449 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.468 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.403 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.424 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.019 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.250 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 25.087 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 24.875 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.167 |
| SRR2868004 | Drought Stress (root) | 19.367 |
| SRR2967015 | Control (root) | 23.048 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 20.703 |
| SRR9715740 | Leaf | 33.527 |
| SRR9715741 | Leaf | 30.365 |
| SRR9715739 | Root | 0.426 |
| SRR9715742 | Root | 5.201 |
| SRR9715743 | Root | 3.824 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.145 |
| SRR8749028 | MeJA induced 9h | 1.187 |
| SRR8749029 | MeJA induced 9h | 0.519 |
| SRR8749030 | Uninduced | 1.733 |
| SRR8749031 | Uninduced | 2.939 |
| SRR8749032 | Uninduced | 3.166 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.460 |
| SRR8400027 | Control - Root | 10.103 |