Gene detail information of Glyur002038s00029107 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G04970.1 | 4.00E-119 | lipid-binding serum glycoprotein family protein |
| NR | AET00614.2 | 0 | LBP/BPI/CETP family, carboxy-terminal domain protein [Medicago truncatula] |
| Swissprot | tr|Q9MAU5|Y1049_ARATH | 3.00E-149 | Putative BPI/LBP family protein At1g04970 (Precursor) |
| trEMBL | tr|G7K498|G7K498_MEDTR | 0 | LBP/BPI/CETP family, carboxy-terminal domain protein {ECO:0000313|EMBL:AET00614.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02038 | 34237 | 38363 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002038s00029107.1 | PF01273.20 | LBP_BPI_CETP | 41 | 193 | 4.10E-19 |
| Glyur002038s00029107.1 | PF02886.12 | LBP_BPI_CETP_C | 265 | 462 | 8.60E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.528 |
| SRR1783600 | control | 18.454 |
| SRR1783602 | moderate drought stress | 15.896 |
| SRR1811619 | moderate drought stress | 16.060 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.423 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.864 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.948 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.491 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.948 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.138 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.644 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.575 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 55.362 |
| SRR2868004 | Drought Stress (root) | 36.922 |
| SRR2967015 | Control (root) | 35.184 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.315 |
| SRR9715740 | Leaf | 4.483 |
| SRR9715741 | Leaf | 5.055 |
| SRR9715739 | Root | 19.398 |
| SRR9715742 | Root | 29.453 |
| SRR9715743 | Root | 30.548 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.832 |
| SRR8749028 | MeJA induced 9h | 4.401 |
| SRR8749029 | MeJA induced 9h | 1.968 |
| SRR8749030 | Uninduced | 3.586 |
| SRR8749031 | Uninduced | 3.358 |
| SRR8749032 | Uninduced | 0.957 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 37.677 |
| SRR8400027 | Control - Root | 32.214 |