Gene detail information of Glyur002038s00029104 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G79590.2 | 2.00E-75 | syntaxin of plants 52 |
| NR | XP_006595709.1 | 3.37E-136 | PREDICTED: syntaxin-51-like [Glycine max] |
| Swissprot | tr|Q94KK7|SYP52_ARATH | 1.00E-112 | Syntaxin-52 |
| trEMBL | tr|I1M6L1|I1M6L1_SOYBN | 1.00E-136 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G02120.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02038 | 22977 | 25574 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 75.386 |
| SRR1783600 | control | 75.166 |
| SRR1783602 | moderate drought stress | 216.047 |
| SRR1811619 | moderate drought stress | 213.687 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 165.929 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 164.080 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 86.942 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 85.037 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 123.522 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 124.015 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.354 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.271 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 101.800 |
| SRR2868004 | Drought Stress (root) | 115.259 |
| SRR2967015 | Control (root) | 105.078 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 41.057 |
| SRR9715740 | Leaf | 45.978 |
| SRR9715741 | Leaf | 51.504 |
| SRR9715739 | Root | 86.644 |
| SRR9715742 | Root | 101.977 |
| SRR9715743 | Root | 92.941 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 57.919 |
| SRR8749028 | MeJA induced 9h | 52.995 |
| SRR8749029 | MeJA induced 9h | 49.613 |
| SRR8749030 | Uninduced | 81.844 |
| SRR8749031 | Uninduced | 94.826 |
| SRR8749032 | Uninduced | 59.404 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 88.839 |
| SRR8400027 | Control - Root | 91.379 |