Gene detail

Gene detail information of Glyur002038s00029103

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G55280.1	8.00E-149	homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1
NR	XP_003617666.1	0	FtsZ protein [Medicago truncatula]
COG	YP_005071738.1	1.00E-124	cell division protein FtsZ [Arthrospira platensis NIES-39]
Swissprot	tr\|Q42545\|FTSZ1_ARATH	0	Cell division protein FtsZ homolog 1, chloroplastic (Precursor)
trEMBL	tr\|I3SGZ6\|I3SGZ6_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK39538.1}

Sequence

Transcript Sequence

>Glyur002038s00029103.1
CATTAATCCACTCAAAATTGGAGGGTAACCAGCGGGAAGAAAAGCTTAACATTTTCCTCTTGCCCTAAAACCCTAAACAAAAAAAACAGAGTAATAAGAAGAAGAAAAAAATCCTTTTCCAACTTACGAGAGGGGAAAAATGGTCATGCTTCTTCCTTCTCTCACAAATCCAAACGAGCTTCTCTCATCCTCCTCCTCGTTCTATCACAATGCACTATCTATCTCACACTCTACTACTTTCACAACCCCGGTTTCCCTCAGTCTCAACCCCAGAACGCAACGCCTCACTCGTCGTTTTGGGTCGGTGAGATGCTCCTTCGACCATGTAGATAATGCCAAAATTAAGGTTGTCGGCATTGGGGGTGGTGGCAACAATGCCGTTAACCGCATGATCGGTAGTGGTTTGCAGGGTGTAGATTTCTATGCAATAAACACTGATGCTCAAGCCCTATTGCATTCTGCTGCTGAGAACCCTATTAAAATTGGAGAACTTCTGACTCGTGGATTAGGTACTGGTGGGAATCCNCTTTTGGGGGAACAAGCTGCGGAGGAATCGAAAGAAGCTATTGCTGATGCCCTTAAAGGGTCTGATTTGGTGTTCATAACAGCTGGGATGGGTGGTGGCACAGGGTCTGGTGCTGCCCCAGTTGTGGCCCAAATATCCAAAGAGGCAGGTTACTTGACTGTAGGTGTAGTTACCTATCCTTTCAGTTTTGAAGGACGGAAAAGATCCTTACAGGCAGGTGCACTTGAAGCCATTGAAAAGCTTCAGAAAAATGTCGATACGCTTATAGTGATTCCAAATGACCGTCTGCTTGACATAGCTGATGANCAGATGCCTCTTCAGGATGCTTTCCTTCTTGCGGATGATGTCTTACGCCAAGGTGTNCAGGGAATATCAGACATTATAACAATACCTGGACTTGTAAATGTGGATTTTGCTGATGTAAAAGCTGTGATGAAAGACTCTGGGACTGCAATGCTTGGAGTGGGTGTTTCCTCAGGTAAAAACAGAGCAGAAGAAGCAGCGGAACAGGCTACTTTGGCTCCTTTAATTGGTTCATCTATTCAATCAGCCACTGGGGTAGTATATAATATTACTGGAGGAAAGGACATTACCCTGCAGGAAGTGAACAGGGTGTCTCAGGTGGTGACTAGTTTGGCNGATCCTTCTGCCAATATTATATTTGGAGCTGTTGTTGATGATCGTTACACTGGGGAGATTCATGTGACTATCATTGCCACTGGCTTTTCACAGTCTTTTCAGAAGAAGCTGCTAACAGATCCAAGGGCTGCAAAGCTGCTTGACAAAGTTGCTGAGGGCCAAGAAAGCAAGGCAAAACCCCCTCCCCTCAAGTCCTCAAACGTGTCTTCCACAGTTGAATCTAGAGCACCCCCACGAAAGCTCTTTTTTTAGCTGCATAGTTCTTTTGCTCTTTTCATTTTTTCTATTCATCGTTTTGTTGTAGTCATTCAGCTGTTTAATGGTCTTGAAGCTTATTTGATTTATTGAAATATCCATTACTCACATGTTTTATGTAATCATGCGCTTAAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02038	20026	22594	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0007017 microtubule-based process

GO:0051258 protein polymerization

cellular_component

GO:0005737 cytoplasm

GO:0005874 microtubule

GO:0043234 protein complex

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002038s00029103.1	PF00091.20	Tubulin	67	239	3.80E-35
Glyur002038s00029103.1	PF12327.3	FtsZ_C	278	371	7.60E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.479
SRR1783600	control	12.535
SRR1783602	moderate drought stress	6.467
SRR1811619	moderate drought stress	6.607

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.700
DRR006520	Root Summer glycyrrhizin high producing strain	7.594
DRR006521	Root Winter glycyrrhizin high producing strain	2.686
DRR006522	Root Winter glycyrrhizin high producing strain	2.516
DRR006523	Root Summer glycyrrhizin low producing strain	7.497
DRR006524	Root Summer glycyrrhizin low producing strain	7.875
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.388
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.485

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.317
SRR2868004	Drought Stress (root)	10.839
SRR2967015	Control (root)	11.751

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.656
SRR9715740	Leaf	8.841
SRR9715741	Leaf	7.405
SRR9715739	Root	5.974
SRR9715742	Root	5.833
SRR9715743	Root	6.527

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.311
SRR8749028	MeJA induced 9h	7.976
SRR8749029	MeJA induced 9h	10.360
SRR8749030	Uninduced	1.483
SRR8749031	Uninduced	0.416
SRR8749032	Uninduced	1.033

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.200
SRR8400027	Control - Root	22.120