Gene detail

Gene detail information of Glyur002037s00037124

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G63120.1	5.00E-80	RHOMBOID-like 2
NR	XP_004515720.1	0	PREDICTED: inactive rhomboid protein 1-like [Cicer arietinum]
COG	YP_002335161.1	8.00E-25	integral membrane protein, Rhomboid family [Thermosipho africanus TCF52B]
trEMBL	tr\|I1MQ05\|I1MQ05_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G32150.1}

Sequence

Transcript Sequence

>Glyur002037s00037124.1
GTTACAATCTACAAACCTGAGAGGTCTCCTTCACTGCTTGGTGATGGTGATGCTGTNATCTCAATTTGTTCCTTAAATAAATAACCTCTCCTTTCAGATTTAAACCCNCTTTCACCAAACCCCACCTCCACCTTCTCTACAAGACACCCTTTTTGTGTAGAAAAATTGAGACTTTACTTTGTGGGTGTGATTGAGTCTTTTGATCCAACACACAGAAAGAGAGAGAGAGAGAGAGAGAGAGATTTGAAAAGAAATGCCTCAGAGAGATCTAGAGAGTAGAGGGTCAATCAAGAACAACAACAGCAACAACAACAACAACTATTCAGCTGCTCCTACTTCCTATGTTTATGATCCAGAAACCAATTGGACATCATGGCTTGTGCCCATGTTTGTGGTGGCCAATGTTTTGGTTTTCATTGTGGCCATGTATATCAACAATTGTCCCAGTAAAAACCTTGGCTTTGAAGGTGACTGTGTGTTAAGATTCCTGGGTAGGTTCTCCTTCCAACCTCTAAGGGAGAATCCATTGTTTGGGCCTTCTTCTTCAACACTAACAAAGATGGGAGCCCTTAAGTGGGATGATGTTGTGAATCATCATCAGGGATGGAGACTTGTCACTTGCATTTGGTTACATGCTGGAATTGTTCATTTGGCAGCGAACATGTTGAGTTTGGTCTTCATTGGCATTCGCCTCGAACAACAATTCGGGTTTGTGAGGATTGGAATCATTTACTTGGCATCTGGATTCGGCGGGAGCGTACTGTCTTCTCTATTTATTAGAAACAACATCTCTGTTGGTGCTTCTGGTGCTCTTTTTGGACTNCTTGGAGCAATGCTTTCAGAACTCATCACAAACTGGAGTATTTATACCAATAAAGCAGCTGCTTTGCTCACACTCGTGCTCATTATTGTCATCAATCTTGCCATTGGCATGTTGCCACATGTTGATAATTTTGCTCATATTGGGGGGTTTCTGACAGGATTTCTCCTTGGTTTCATTTTCCTTCCCCGTCCTCAATTCGGGTGGTTAGAGCAGCGACATGTTCCCGCCGGTGTTCGCCTCAAGTCNAAATACAAGGCTTACCAATATGTTCTATGGATTGTCTCTGTTGTTCTATTGATTGCCGGGTTNTNTGTTGCTTTGTTGATGCTATTTCGTGGGGAGAATGGATATGATCGCTGCCATTGGTGTCACTACCTAACATGTGTTCCAACTTCTAAATGGAAATGCAATGAGAATTAAAACGAAAGGGCATGAGCTATTCCTGTTCTTTNATGTATAGCTATATATAGCTTTTAGTTTTCAATTTGATTTTTGTTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02037	46916	50411	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0004252 serine-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002037s00037124.1	PF01694.17	Rhomboid	112	255	2.20E-50

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.331
SRR1783600	control	10.408
SRR1783602	moderate drought stress	11.473
SRR1811619	moderate drought stress	11.897

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.978
DRR006520	Root Summer glycyrrhizin high producing strain	26.593
DRR006521	Root Winter glycyrrhizin high producing strain	30.405
DRR006522	Root Winter glycyrrhizin high producing strain	29.823
DRR006523	Root Summer glycyrrhizin low producing strain	26.888
DRR006524	Root Summer glycyrrhizin low producing strain	25.435
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.074
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.644

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.833
SRR2868004	Drought Stress (root)	33.599
SRR2967015	Control (root)	32.778

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.640
SRR9715740	Leaf	30.189
SRR9715741	Leaf	33.488
SRR9715739	Root	14.286
SRR9715742	Root	26.641
SRR9715743	Root	25.626

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.957
SRR8749028	MeJA induced 9h	9.928
SRR8749029	MeJA induced 9h	7.486
SRR8749030	Uninduced	3.764
SRR8749031	Uninduced	2.977
SRR8749032	Uninduced	2.010

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.406
SRR8400027	Control - Root	48.741