Gene detail information of Glyur002037s00037121 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G07240.1 | 4.00E-21 | IQ-domain 24 |
| NR | XP_003549118.1 | 0 | PREDICTED: protein IQ-DOMAIN 14-like [Glycine max] |
| Swissprot | tr|Q8LPG9|IQD14_ARATH | 2.00E-15 | Protein IQ-DOMAIN 14 |
| trEMBL | tr|K7MIL1|K7MIL1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G32161.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02037 | 23070 | 30668 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002037s00037121.1 | PF00612.22 | IQ | 140 | 160 | 8.90E-07 |
| Glyur002037s00037121.1 | PF00612.22 | IQ | 163 | 180 | 0.011 |
| Glyur002037s00037121.1 | PF13178.1 | DUF4005 | 369 | 445 | 2.70E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.948 |
| SRR1783600 | control | 20.156 |
| SRR1783602 | moderate drought stress | 13.481 |
| SRR1811619 | moderate drought stress | 13.257 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.321 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.243 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.242 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.236 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.037 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.838 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.483 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.461 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.942 |
| SRR2868004 | Drought Stress (root) | 5.505 |
| SRR2967015 | Control (root) | 3.716 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 40.636 |
| SRR9715740 | Leaf | 47.173 |
| SRR9715741 | Leaf | 37.491 |
| SRR9715739 | Root | 7.716 |
| SRR9715742 | Root | 11.330 |
| SRR9715743 | Root | 11.455 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 107.469 |
| SRR8749028 | MeJA induced 9h | 18.878 |
| SRR8749029 | MeJA induced 9h | 25.517 |
| SRR8749030 | Uninduced | 0.792 |
| SRR8749031 | Uninduced | 0.573 |
| SRR8749032 | Uninduced | 1.446 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.882 |
| SRR8400027 | Control - Root | 10.139 |