Gene detail information of Glyur002037s00037120 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G16710.1 | 8.00E-41 | Iron-sulphur cluster biosynthesis family protein |
| NR | XP_004494031.1 | 5.97E-67 | PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial-like [Cicer arietinum] |
| COG | YP_422389.1 | 5.00E-26 | hypothetical protein amb3026 [Magnetospirillum magneticum AMB-1] |
| Swissprot | tr|Q8LBM4|ISAM1_ARATH | 4.00E-51 | Iron-sulfur assembly protein IscA-like 1, mitochondrial (Precursor) |
| trEMBL | tr|I3T186|I3T186_MEDTR | 1.00E-63 | Uncharacterized protein {ECO:0000313|EMBL:AFK46278.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02037 | 204 | 3096 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002037s00037120.1 | PF01521.15 | Fe-S_biosyn | 22 | 80 | 4.10E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.611 |
| SRR1783600 | control | 6.394 |
| SRR1783602 | moderate drought stress | 6.907 |
| SRR1811619 | moderate drought stress | 7.457 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.867 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.770 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 30.876 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 31.173 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.400 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.727 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 36.890 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 34.545 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 40.998 |
| SRR2868004 | Drought Stress (root) | 39.968 |
| SRR2967015 | Control (root) | 32.610 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 32.075 |
| SRR9715740 | Leaf | 31.480 |
| SRR9715741 | Leaf | 35.443 |
| SRR9715739 | Root | 9.539 |
| SRR9715742 | Root | 10.375 |
| SRR9715743 | Root | 9.958 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.835 |
| SRR8749028 | MeJA induced 9h | 12.174 |
| SRR8749029 | MeJA induced 9h | 31.179 |
| SRR8749030 | Uninduced | 16.551 |
| SRR8749031 | Uninduced | 22.740 |
| SRR8749032 | Uninduced | 17.133 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 27.771 |
| SRR8400027 | Control - Root | 27.459 |