Gene detail information of Glyur002036s00032100 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G27460.1 | 1.00E-86 | Cystathionine beta-synthase (CBS) family protein |
| NR | KHN28045.1 | 0 | CBS domain-containing protein CBSX5 [Glycine soja] |
| Swissprot | tr|Q84WQ5|CBSX5_ARATH | 1.00E-124 | CBS domain-containing protein CBSX5 |
| trEMBL | tr|I1LUY9|I1LUY9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G35090.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02036 | 28231 | 30584 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 30.608 |
| SRR1783600 | control | 30.798 |
| SRR1783602 | moderate drought stress | 29.545 |
| SRR1811619 | moderate drought stress | 29.396 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 64.672 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 64.208 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 28.855 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 28.029 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 105.096 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 104.668 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.767 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.353 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 74.718 |
| SRR2868004 | Drought Stress (root) | 68.600 |
| SRR2967015 | Control (root) | 167.004 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 47.331 |
| SRR9715740 | Leaf | 48.155 |
| SRR9715741 | Leaf | 81.817 |
| SRR9715739 | Root | 217.907 |
| SRR9715742 | Root | 220.385 |
| SRR9715743 | Root | 211.958 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 57.042 |
| SRR8749028 | MeJA induced 9h | 61.192 |
| SRR8749029 | MeJA induced 9h | 69.247 |
| SRR8749030 | Uninduced | 112.659 |
| SRR8749031 | Uninduced | 87.015 |
| SRR8749032 | Uninduced | 153.442 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.478 |
| SRR8400027 | Control - Root | 47.341 |